RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NR1D1P20393 614 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 HACE1Q8IYU2 909 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 HGSO14964 777 aaPredicted RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 ZC3H18Q86VM9 953 aaKnown RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 TTC16Q8NEE8 873 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 TMEM60Q9H2L4 133 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 CFAP73A6NFT4 308 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 KRT39Q6A163 491 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 S100BP04271 92 aaPredicted RBP15.56■□□□□ 0.08
COL7A1-201ENST00000328333 NBPF20Q3BBV1 942 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 ABCC2Q92887 1545 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 PBKQ96KB5 322 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 GCNT3O95395 438 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 ARHGEF10LQ9HCE6 1279 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 PCDHB13Q9Y5F0 798 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 SPAG7O75391 227 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 C1orf112Q9NSG2 853 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 MAST3O60307 1309 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 EXOC3O60645 756 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 SERPINI2O75830 405 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 ARMC2Q8NEN0 867 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 FMO2Q99518 471 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 TRIM33Q9UPN9 1127 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 LETM2Q2VYF4 491 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 PPP1R13BQ96KQ4 1090 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 AOC3Q16853 763 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 TTC6Q86TZ1 520 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 HOOK2Q96ED9 719 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 STAMBPL1Q96FJ0 436 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 GSDMAQ96QA5 445 aa15.56■□□□□ 0.08
COL7A1-201ENST00000328333 FAM212AQ96EL1 285 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 TRAIPQ9BWF2 469 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 A0A1W2PQ27 194 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 A0A1W2PQ64 194 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 A0A1W2PQD8 194 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 SLFN12Q8IYM2 578 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 CCPG1Q9ULG6 757 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 GUCY2DQ02846 1103 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 RIOK1Q9BRS2 568 aaKnown RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 ARMCX3Q9UH62 379 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 MYO18AQ92614 2054 aaKnown RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 TCEANC2Q96MN5 208 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 EPN1Q9Y6I3 576 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 SLC27A2O14975 620 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 LDHBP07195 334 aaKnown RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 ACTN1P12814 892 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 IKBKBO14920 756 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 IFNB1P01574 187 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 PHF23Q9BUL5 403 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-201ENST00000328333 ADCY7P51828 1080 aa15.55■□□□□ 0.08
COL7A1-201ENST00000328333 HERC4Q5GLZ8 1057 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-201ENST00000328333 KLC3Q6P597 504 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 BATF3Q9NR55 127 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 SGSM2O43147 1006 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 BRD1O95696 1058 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 KRT8P05787 483 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 FAM207AQ9NSI2 230 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-201ENST00000328333 TEX14Q8IWB6 1497 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 EXOC5O00471 708 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 MRRFQ96E11 262 aaKnown RBP15.54■□□□□ 0.08
COL7A1-201ENST00000328333 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-201ENST00000328333 GNGT2O14610 69 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 DENND2AQ9ULE3 1009 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 PCP11498 1178 aaKnown RBP15.54■□□□□ 0.08
COL7A1-201ENST00000328333 REREQ9P2R6 1566 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 RNF207Q6ZRF8 634 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 CFAP74Q9C0B2 1584 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 F8W8V4 182 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 HOMEZQ8IX15 550 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 PHKBQ93100 1093 aa15.54■□□□□ 0.08
COL7A1-201ENST00000328333 NOS1P29475 1434 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 POLE2P56282 527 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 GIPC2Q8TF65 315 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ARHGAP26Q9UNA1 814 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 GPC4O75487 556 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 PRPSAP1Q14558 356 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 CWF19L2Q2TBE0 894 aaKnown RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 APOA1P02647 267 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 AP2B1P63010 937 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ZNF174Q15697 407 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 RTEL1Q9NZ71 1219 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 CD2APQ9Y5K6 639 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 VIRMAQ69YN4 1812 aaKnown RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ZNF189O75820 626 aaPredicted RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 PUM3Q15397 648 aaKnown RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 NOSTRINQ8IVI9 506 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 PRPF38AQ8NAV1 312 aaKnown RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 PSMB7Q99436 277 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ARHGDIAP52565 204 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 EP400NLQ6ZTU2 488 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ENAHQ8N8S7 591 aaPredicted RBP15.53■□□□□ 0.08
COL7A1-201ENST00000328333 ATP6V0A1Q93050 837 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 TAB2Q9NYJ8 693 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 SNX1Q13596 522 aa15.53■□□□□ 0.08
COL7A1-201ENST00000328333 TTLL7Q6ZT98 887 aa15.52■□□□□ 0.08
COL7A1-201ENST00000328333 URB2Q14146 1524 aaKnown RBP15.52■□□□□ 0.08
COL7A1-201ENST00000328333 ATF7P17544 494 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-201ENST00000328333 ZNF710Q8N1W2 664 aa15.52■□□□□ 0.08
COL7A1-201ENST00000328333 STK17AQ9UEE5 414 aa15.52■□□□□ 0.08
COL7A1-201ENST00000328333 CMA1P23946 247 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms