RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TDO2P48775 406 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 CDK7P50613 346 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 GJA9P57773 515 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 CCDC144BQ3MJ40 725 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 PPP4R3BQ5MIZ7 849 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 TMEM199Q8N511 208 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 TIFAQ96CG3 184 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 ZNF576Q9H609 170 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 MTMR4Q9NYA4 1195 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 ARVCFO00192 962 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 RNF113AO15541 343 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 SLC4A3P48751 1232 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 GNASQ5JWF2 1037 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 PSRC1Q6PGN9 363 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 ARMCX2Q7L311 632 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 OSBP2Q969R2 916 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 SEZ6LQ9BYH1 1024 aa17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 RAVER2Q9HCJ3 691 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-201ENST00000301897 SLC3A2P08195 630 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 NKX3-2P78367 333 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 PDE4BQ07343 736 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 GRIN2CQ14957 1233 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 CCDC129Q6ZRS4 1044 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 CHURC1Q8WUH1 139 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 CEP95Q96GE4 821 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 GAS2L1Q99501 681 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 NACAP1Q9BZK3 213 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 MTIF3Q9H2K0 278 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 PLIN4Q96Q06 1357 aa17.6■□□□□ 0.41
CCDC88B-201ENST00000301897 MYADML2A6NDP7 307 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 ASB14A6NK59 587 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 GPAA1O43292 621 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 CABYRO75952 493 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 APPP05067 770 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 BMP3P12645 472 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 STAT2P52630 851 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 TKFCQ3LXA3 575 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 TJAP1Q5JTD0 557 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 TMEM240Q5SV17 173 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 FAM160B2Q86V87 743 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 STK11IPQ8N1F8 1099 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 ACAD9Q9H845 621 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 PRDM6Q9NQX0 595 aa17.59■□□□□ 0.41
CCDC88B-201ENST00000301897 PATL2C9JE40 543 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 SMARCA5O60264 1052 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 TSPY3P0CV98 308 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 TSPY8P0CW00 308 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 RASIP1Q5U651 963 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 DIEXFQ68CQ4 756 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 SLFN13Q68D06 897 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 FGD4Q96M96 766 aa17.58■□□□□ 0.4
CCDC88B-201ENST00000301897 CHD9Q3L8U1 2897 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 ZEB2O60315 1214 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 CSF2RAP15509 400 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 TNFAIP2Q03169 654 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 RAB30Q15771 203 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 AKNAD1Q5T1N1 836 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 FAM126BQ8IXS8 530 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 LRRC47Q8N1G4 583 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 NEDD1Q8NHV4 660 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 GMCL1Q96IK5 515 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 EPB41L4AQ9HCS5 686 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 RCAN3Q9UKA8 241 aa17.57■□□□□ 0.4
CCDC88B-201ENST00000301897 MUC3AQ02505 3323 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 TMEM232C9JQI7 657 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 ADCY6O43306 1168 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 PLA2G6O60733 806 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 PRDM1O75626 825 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 IKQ13123 557 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 NOL8Q76FK4 1167 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 C16orf59Q7L2K0 433 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 IFNL3Q8IZI9 196 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 FAM133AQ8N9E0 248 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 KATNBL1Q9H079 304 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 IL23AQ9NPF7 189 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 HOMER2Q9NSB8 354 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 MSRAQ9UJ68 235 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 ISY1Q9ULR0 285 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 BDP1A6H8Y1 2624 aa17.56■□□□□ 0.4
CCDC88B-201ENST00000301897 CD4P01730 458 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 SLC1A4P43007 532 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 CNTN2Q02246 1040 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 ZNF365Q70YC5 407 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 SLC43A3Q8NBI5 491 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 STAG1Q8WVM7 1258 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 HERVK_113Q902F9 699 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 PBX4Q9BYU1 374 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 AP5M1Q9H0R1 490 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 DCTPP1Q9H773 170 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 RNF146Q9NTX7 359 aa17.55■□□□□ 0.4
CCDC88B-201ENST00000301897 ERC2O15083 957 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 CTAGE5O15320 804 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 FSCN1Q16658 493 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 TLK2Q86UE8 772 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 ATXN2LQ8WWM7 1075 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 PPP1R12CQ9BZL4 782 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 NAPBQ9H115 298 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 HIPK3Q9H422 1215 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms