RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 WDR59Q6PJI9 974 aa27.4■■□□□ 1.98
SPTSSA-201ENST00000298130 MYO6Q9UM54 1294 aa27.4■■□□□ 1.98
SPTSSA-201ENST00000298130 ZMYND10O75800 440 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 FCER1AP12319 257 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 FECHP22830 423 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 ARL6IP4Q66PJ3 421 aaKnown RBP27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 CLEC4GQ6UXB4 293 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 AMIGO3Q86WK7 504 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 PCMTD1Q96MG8 357 aaPredicted RBP27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 DUSP10Q9Y6W6 482 aa27.39■■□□□ 1.98
SPTSSA-201ENST00000298130 C12orf60Q5U649 245 aa27.39■■□□□ 1.97
SPTSSA-201ENST00000298130 ADAM21Q9UKJ8 722 aa27.39■■□□□ 1.97
SPTSSA-201ENST00000298130 H7C1D1 291 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 ATP1A1P05023 1023 aaKnown RBP27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 FAM182BQ5T319 152 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 OR8K1Q8NGG5 319 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 STRCQ7RTU9 1775 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 PLCG1P19174 1290 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 HERVK_113P62684 666 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 CYP27A1Q02318 531 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 ANKIB1Q9P2G1 1089 aa27.38■■□□□ 1.97
SPTSSA-201ENST00000298130 RCCD1A6NED2 376 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 MAP2K7O14733 419 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 TXNRD1Q16881 649 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 CCDC122Q5T0U0 273 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 SETDB2Q96T68 719 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 STK4Q13043 487 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 CSGALNACT2Q8N6G5 542 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 A0A1B0GUL6 1792 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 LGALS16A8MUM7 142 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 CCNT1O60563 726 aaKnown RBP27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 TMEM47Q9BQJ4 181 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 LACRTQ9GZZ8 138 aa27.37■■□□□ 1.97
SPTSSA-201ENST00000298130 SBK1Q52WX2 424 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 USP17L2Q6R6M4 530 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 M0R2N6 131 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 TRIM21P19474 475 aaKnown RBP27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 TECP42680 631 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 AMPD2Q01433 879 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 ZNF444Q8N0Y2 327 aaPredicted RBP27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 MSANTD4Q8NCY6 345 aa27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 MAGEC2Q9UBF1 373 aaPredicted RBP27.36■■□□□ 1.97
SPTSSA-201ENST00000298130 STXBP3O00186 592 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 PDE4DQ08499 809 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 FAM98CQ17RN3 349 aaKnown RBP27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 ZNF507Q8TCN5 953 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 MMS19Q96T76 1030 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 DUSP9Q99956 384 aaKnown RBP27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 TUBGCP2Q9BSJ2 902 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 L1RE1Q9UN81 338 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 ZNF185O15231 689 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 ANKRD40Q6AI12 368 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 RAB21Q9UL25 225 aa27.35■■□□□ 1.97
SPTSSA-201ENST00000298130 RASSF10A6NK89 507 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 PSMA7O14818 248 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 GRM4Q14833 912 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 TTI2Q6NXR4 508 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 CCDC102AQ96A19 550 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 GOLGB1Q14789 3259 aaKnown RBP27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 MACROD2A1Z1Q3 448 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 LDHBP07195 334 aaKnown RBP27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 NAPAP54920 295 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 ASIC1P78348 528 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 NFIXQ14938 502 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 HDXQ7Z353 690 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 KIAA1328Q86T90 577 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 DGKHQ86XP1 1220 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 UIMC1Q96RL1 719 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 FAN1Q9Y2M0 1017 aa27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 COL14A1Q05707 1796 aaKnown RBP27.34■■□□□ 1.97
SPTSSA-201ENST00000298130 KLRF2D3W0D1 207 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 TBC1D8BQ0IIM8 1120 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 CABP7Q86V35 215 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 GSPT2Q8IYD1 628 aaKnown RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 PYM1Q9BRP8 204 aaKnown RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 CALCOCO1Q9P1Z2 691 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 MKRN1Q9UHC7 482 aaKnown RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 PLEKP08567 350 aaPredicted RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 MRPS25P82663 173 aaKnown RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 TRIM14Q14142 442 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 TSR1Q2NL82 804 aaKnown RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 TAF3Q5VWG9 929 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 KRT26Q7Z3Y9 468 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 GIMAP8Q8ND71 665 aaPredicted RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 SMCR8Q8TEV9 937 aaPredicted RBP27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 UBA5Q9GZZ9 404 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 KBTBD4Q9NVX7 518 aa27.33■■□□□ 1.97
SPTSSA-201ENST00000298130 LRRIQ3A6PVS8 624 aaPredicted RBP27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 GNPATO15228 680 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 CASP8Q14790 479 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 WHAMMP3Q1A5X7 153 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 BARHL2Q9NY43 387 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 SLC39A2Q9NP94 309 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 TMEM260Q9NX78 707 aa27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 BIN2Q9UBW5 565 aaPredicted RBP27.32■■□□□ 1.96
SPTSSA-201ENST00000298130 CNOT6LQ96LI5 555 aaKnown RBP27.31■■□□□ 1.96
SPTSSA-201ENST00000298130 DRC1Q96MC2 740 aa27.31■■□□□ 1.96
SPTSSA-201ENST00000298130 MTIF2P46199 727 aaKnown RBP27.31■■□□□ 1.96
SPTSSA-201ENST00000298130 PIP4K2BP78356 416 aa27.31■■□□□ 1.96
SPTSSA-201ENST00000298130 STIM1Q13586 685 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms