RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 ZNF449Q6P9G9 518 aa12.85□□□□□ -0.35
SNIP1-201ENST00000296215 MAGEC3Q8TD91 643 aa12.85□□□□□ -0.35
SNIP1-201ENST00000296215 NMD3Q96D46 503 aaKnown RBP12.85□□□□□ -0.35
SNIP1-201ENST00000296215 RAB17Q9H0T7 212 aa12.85□□□□□ -0.35
SNIP1-201ENST00000296215 EPB41L5Q9HCM4 733 aa12.85□□□□□ -0.35
SNIP1-201ENST00000296215 CCDC169A6NNP5 214 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 FGFR1OPO95684 399 aaKnown RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 KRT7P08729 469 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ACADSP16219 412 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ATP8B2P98198 1209 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ZCWPW2Q504Y3 356 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 PPP1R15BQ5SWA1 713 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 SKA1Q96BD8 255 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 RBM17Q96I25 401 aaKnown RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 FHDC1Q9C0D6 1143 aaPredicted RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 CADPSQ9ULU8 1353 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 E7ENQ6 273 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 MARCH6O60337 910 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ATP5HO75947 161 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 TCP1P17987 556 aaKnown RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 FAM69CQ0P6D2 419 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 WLSQ5T9L3 541 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 NCCRP1Q6ZVX7 275 aaPredicted RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 SUN5Q8TC36 379 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 FERMT1Q9BQL6 677 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 TRIM31Q9BZY9 425 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 PREBQ9HCU5 417 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 NDUFA13Q9P0J0 144 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 SCHIP1Q9P0W5 487 aaPredicted RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 UTP11Q9Y3A2 253 aaKnown RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 TMED5Q9Y3A6 229 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 LAMC3Q9Y6N6 1575 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 CCDC166P0CW27 439 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 KAZNQ674X7 775 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 PCDHGC5Q9Y5F6 944 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 A0A087WWV3 80 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ZCCHC18P0CG32 403 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 SERPINB8P50452 374 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 MAP3K12Q12852 859 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 R3HDM1Q15032 1099 aaKnown RBP12.84□□□□□ -0.35
SNIP1-201ENST00000296215 ARMCX5Q6P1M9 558 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 PNKPQ96T60 521 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 CYTH2Q99418 400 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 KRT23Q9C075 422 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 TMOD2Q9NZR1 351 aa12.84□□□□□ -0.35
SNIP1-201ENST00000296215 KIAA1107Q9UPP5 1409 aa12.83□□□□□ -0.35
SNIP1-201ENST00000296215 MMEP08473 750 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 EIF4BP23588 611 aaKnown RBP12.83□□□□□ -0.36
SNIP1-201ENST00000296215 BTN2A1Q7KYR7 527 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 PDZD8Q8NEN9 1154 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 USP28Q96RU2 1077 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 ANLNQ9NQW6 1124 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 CUX2O14529 1486 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 AP3B1O00203 1094 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 IGF2BP3O00425 579 aaKnown RBP eCLIP12.83□□□□□ -0.36
SNIP1-201ENST00000296215 TMEM259Q4ZIN3 620 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 PPP4R3AQ6IN85 833 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 PATL1Q86TB9 770 aaKnown RBP12.83□□□□□ -0.36
SNIP1-201ENST00000296215 KIF2BQ8N4N8 673 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 SNX29Q8TEQ0 813 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 RPS6KC1Q96S38 1066 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 CHPF2Q9P2E5 772 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 LRRC9Q6ZRR7 1453 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 ARHGAP42A6NI28 874 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 ESRRBO95718 433 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 RAP1GDS1P52306 607 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 USP46P62068 366 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 SLC7A5Q01650 507 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 BLMHQ13867 455 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 ANKRD20A8PQ5CZ79 823 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 RFWD2Q8NHY2 731 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 KLHL25Q9H0H3 589 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 HYOU1Q9Y4L1 999 aa12.83□□□□□ -0.36
SNIP1-201ENST00000296215 SYCE1LA8MT33 242 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 HEXIM1O94992 359 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 HARSP12081 509 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 CPA1P15085 419 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 POLR2FP61218 127 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PPP2R2AP63151 447 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 BIRC3Q13489 604 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 GLE1Q53GS7 698 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PCDHGA4Q9Y5G9 962 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 IVNS1ABPQ9Y6Y0 642 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PARD3Q8TEW0 1356 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 GOLGA8AA7E2F4 631 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 GOLGA8BA8MQT2 603 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 ZBED6P86452 979 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 TEFQ10587 303 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 DCTN2Q13561 401 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 DAB2IPQ5VWQ8 1189 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 TOGARAM2Q6ZUX3 1019 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 KRT27Q7Z3Y8 459 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PPP1R42Q7Z4L9 355 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 STKLD1Q8NE28 680 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 RNPC3Q96LT9 517 aaKnown RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 BARX2Q9UMQ3 279 aaPredicted RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PTPN21Q16825 1174 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 PDXDC1Q6P996 788 aa12.82□□□□□ -0.36
SNIP1-201ENST00000296215 POLR3CQ9BUI4 534 aaPredicted RBP12.82□□□□□ -0.36
SNIP1-201ENST00000296215 DDX28Q9NUL7 540 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms