RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CCDC13Q8IYE1 715 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 CALUO43852 315 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 RPS6KA2Q15349 733 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 RASIP1Q5U651 963 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 TAF12Q16514 161 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 CDCA7Q9BWT1 371 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 ANKRD42Q8N9B4 389 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 PPP1R13BQ96KQ4 1090 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF215Q9UL58 517 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 IKBKBO14920 756 aa10.83□□□□□ -0.67
COL6A3-201ENST00000295550 PPARAQ07869 468 aa10.83□□□□□ -0.67
COL6A3-201ENST00000295550 CCDC93Q567U6 631 aa10.83□□□□□ -0.67
COL6A3-201ENST00000295550 NXNQ6DKJ4 435 aa10.83□□□□□ -0.67
COL6A3-201ENST00000295550 FAM71BQ8TC56 605 aa10.83□□□□□ -0.67
COL6A3-201ENST00000295550 SLC8A3P57103 927 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 RPS6KA1Q15418 735 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 PROSER3Q2NL68 480 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 FBXO18Q8NFZ0 1043 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 CCNT1O60563 726 aaKnown RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 PHBP35232 272 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 SMTNP53814 917 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 VPS16Q9H269 839 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 PARP2Q9UGN5 583 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 DDB1Q16531 1140 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 GLT8D2Q9H1C3 349 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 EFCC1Q9HA90 598 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 V9GY48 417 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 M0R2C6 588 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 KRT25Q7Z3Z0 450 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 CSGALNACT2Q8N6G5 542 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 NSUN7Q8NE18 718 aaKnown RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 SFMBT2Q5VUG0 894 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 MYO5BQ9ULV0 1848 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 DAPK3O43293 454 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 SLC9C1Q4G0N8 1177 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 EDC3Q96F86 508 aaKnown RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 STK24Q9Y6E0 443 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 ZSCAN10Q96SZ4 725 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 TLR7Q9NYK1 1049 aaKnown RBP10.83□□□□□ -0.68
COL6A3-201ENST00000295550 ZBTB21Q9ULJ3 1066 aa10.83□□□□□ -0.68
COL6A3-201ENST00000295550 KCNJ18B7U540 433 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 EVI5O60447 810 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 RNF8O76064 485 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 APOEP02649 317 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 KCNJ12Q14500 433 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 ORAI2Q96SN7 254 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 KIF2CQ99661 725 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 PDE6AP16499 860 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 SAR1BQ9Y6B6 198 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 C11orf57Q6ZUT1 292 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-201ENST00000295550 ANKFY1Q9P2R3 1169 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 KCNJ14Q9UNX9 436 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 HOMER3Q9NSC5 361 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 CCDC125Q86Z20 511 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 CTTNBP2NLQ9P2B4 639 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 RRP15Q9Y3B9 282 aaKnown RBP10.82□□□□□ -0.68
COL6A3-201ENST00000295550 CENPKQ9BS16 269 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 TPTE2Q6XPS3 522 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 CFAP61Q8NHU2 1237 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 PDE11AQ9HCR9 933 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 EPS15L1Q9UBC2 864 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 B4DLN1 442 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 MRPL12P52815 198 aaKnown RBP10.82□□□□□ -0.68
COL6A3-201ENST00000295550 LRRC23Q53EV4 343 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-201ENST00000295550 ZNF654Q8IZM8 581 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 RNF34Q969K3 372 aa10.82□□□□□ -0.68
COL6A3-201ENST00000295550 PPP6R2O75170 966 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 SLC39A14Q15043 492 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 SLC12A2P55011 1212 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 TCIRG1Q13488 830 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 MORC3Q14149 939 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ARPP21Q9UBL0 812 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 DDAH1O94760 285 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 PCCAP05165 728 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 TRMT44Q8IYL2 757 aaKnown RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 PDLIM2Q96JY6 352 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 HAUS2Q9NVX0 235 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 THAP12O43422 761 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 PDE4DQ08499 809 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 JADE1Q6IE81 842 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 DCUN1D2Q6PH85 259 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 TAB2Q9NYJ8 693 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 MAN1A1P33908 653 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 BSPRYQ5W0U4 402 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 TSC1Q92574 1164 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 SLF1Q9BQI6 1058 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 PLEKHA4Q9H4M7 779 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 CLIC4Q9Y696 253 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ETF1P62495 437 aaKnown RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ARHGAP4P98171 946 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 SEPT8Q92599 483 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 MAGEF1Q9HAY2 307 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 HARSP12081 509 aaKnown RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 CCDC84Q86UT8 332 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 BAG5Q9UL15 447 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 IFT172Q9UG01 1749 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ADKP55263 362 aaKnown RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 LETM2Q2VYF4 491 aa10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ZBTB38Q8NAP3 1195 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-201ENST00000295550 ATG3Q9NT62 314 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms