RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KRT25Q7Z3Z0 450 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 FAM160B2Q86V87 743 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 GLT8D2Q9H1C3 349 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 RIC8AQ9NPQ8 531 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 FEM1BQ9UK73 627 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 PRR12Q9ULL5 1215 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 PTPRAP18433 802 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 CMA1P23946 247 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 MARCKSP29966 332 aaPredicted RBP16.13■□□□□ 0.17
SS18-201ENST00000269137 KRT26Q7Z3Y9 468 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 REXO1Q8N1G1 1221 aaKnown RBP16.13■□□□□ 0.17
SS18-201ENST00000269137 RASGRP4Q8TDF6 673 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 ZKSCAN4Q969J2 545 aaPredicted RBP16.13■□□□□ 0.17
SS18-201ENST00000269137 AMNQ9BXJ7 453 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 TAF1DQ9H5J8 278 aaPredicted RBP16.13■□□□□ 0.17
SS18-201ENST00000269137 AS3MTQ9HBK9 375 aa16.13■□□□□ 0.17
SS18-201ENST00000269137 DDX19AQ9NUU7 478 aaKnown RBP16.13■□□□□ 0.17
SS18-201ENST00000269137 WDR46O15213 610 aaKnown RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 CUTAO60888 179 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 USP2O75604 605 aaPredicted RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 LETM1O95202 739 aaPredicted RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 ATP2B1P20020 1258 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 MRPL12P52815 198 aaKnown RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 USP14P54578 494 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 TRAF1Q13077 416 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 CCDC73Q6ZRK6 1079 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 KRI1Q8N9T8 703 aaKnown RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.12■□□□□ 0.17
SS18-201ENST00000269137 MRPS27Q92552 414 aaKnown RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 DACT1Q9NYF0 836 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 PCDHA1Q9Y5I3 950 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 POTECB2RU33 542 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 ADM5C9JUS6 153 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 PTPREP23469 700 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 FAM160A1Q05DH4 1040 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 ZYXQ15942 572 aaKnown RBP16.12■□□□□ 0.17
SS18-201ENST00000269137 TEX2Q8IWB9 1127 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 FSIP1Q8NA03 581 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 ZNF280CQ8ND82 737 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 ENGASEQ8NFI3 743 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 CUL5Q93034 780 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 WDR90Q96KV7 1748 aa16.12■□□□□ 0.17
SS18-201ENST00000269137 FAM237AA0A1B0GTK4 181 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 NR1I2O75469 434 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 BACE1P56817 501 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 MAP3K9P80192 1104 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 NONOQ15233 471 aaKnown RBP eCLIP16.11■□□□□ 0.17
SS18-201ENST00000269137 PNMA8AQ86V59 439 aaPredicted RBP16.11■□□□□ 0.17
SS18-201ENST00000269137 FBXO11Q86XK2 927 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
SS18-201ENST00000269137 RANBP17Q9H2T7 1088 aaKnown RBP16.11■□□□□ 0.17
SS18-201ENST00000269137 GOLPH3LQ9H4A5 285 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 PSTPIP2Q9H939 334 aa16.11■□□□□ 0.17
SS18-201ENST00000269137 FBXO2Q9UK22 296 aaPredicted RBP16.11■□□□□ 0.17
SS18-201ENST00000269137 SRPRBQ9Y5M8 271 aaKnown RBP16.11■□□□□ 0.17
SS18-201ENST00000269137 WNT7AO00755 349 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 SOCS7O14512 581 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 PPP1R12BO60237 982 aaPredicted RBP16.1■□□□□ 0.17
SS18-201ENST00000269137 CLK2P49760 499 aaKnown RBP16.1■□□□□ 0.17
SS18-201ENST00000269137 SPP2Q13103 211 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 SNW1Q13573 536 aaKnown RBP16.1■□□□□ 0.17
SS18-201ENST00000269137 ZNF174Q15697 407 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 EMILIN3Q9NT22 766 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 FZD1Q9UP38 647 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 SYCE3A1L190 88 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 FSD2A1L4K1 749 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 ATP2C1P98194 919 aaPredicted RBP16.1■□□□□ 0.17
SS18-201ENST00000269137 MTMR2Q13614 643 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 INF2Q27J81 1249 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 RESP18Q5W5W9 173 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 FERMT2Q96AC1 680 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 NUP62CLQ9H1M0 184 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 CLSTN2Q9H4D0 955 aa16.1■□□□□ 0.17
SS18-201ENST00000269137 BIN2Q9UBW5 565 aaPredicted RBP16.1■□□□□ 0.17
SS18-201ENST00000269137 C19orf81C9J6K1 198 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 ORC2Q13416 577 aaPredicted RBP16.09■□□□□ 0.17
SS18-201ENST00000269137 JAKMIP3Q5VZ66 844 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 SHC4Q6S5L8 630 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.09■□□□□ 0.17
SS18-201ENST00000269137 FMR1NBQ8N0W7 255 aaPredicted RBP16.09■□□□□ 0.17
SS18-201ENST00000269137 KIFC2Q96AC6 838 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 C12orf42Q96LP6 360 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 ZHX2Q9Y6X8 837 aa16.09■□□□□ 0.17
SS18-201ENST00000269137 A0A1B0GVL5 298 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 NF2P35240 595 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 SNAP25P60880 206 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 PTGDRQ13258 359 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 ARL6IP4Q66PJ3 421 aaKnown RBP16.08■□□□□ 0.17
SS18-201ENST00000269137 MCTP2Q6DN12 878 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 LRSAM1Q6UWE0 723 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 DLK2Q6UY11 383 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 PRPF38AQ8NAV1 312 aaKnown RBP16.08■□□□□ 0.17
SS18-201ENST00000269137 CDCA5Q96FF9 252 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 CLIC6Q96NY7 704 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 FBXO28Q9NVF7 368 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 HPSEQ9Y251 543 aa16.08■□□□□ 0.17
SS18-201ENST00000269137 PAPPA2Q9BXP8 1791 aa16.08■□□□□ 0.16
SS18-201ENST00000269137 KINO60870 393 aaKnown RBP16.08■□□□□ 0.16
SS18-201ENST00000269137 VCAM1P19320 739 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms