RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SMCR8Q8TEV9 937 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-201ENST00000253024 ANKZF1Q9H8Y5 726 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 ORC4O43929 436 aa23.95■■□□□ 1.43
TRIM28-201ENST00000253024 TRIM21P19474 475 aaKnown RBP23.95■■□□□ 1.43
TRIM28-201ENST00000253024 PDE4DQ08499 809 aa23.95■■□□□ 1.43
TRIM28-201ENST00000253024 STK4Q13043 487 aa23.95■■□□□ 1.43
TRIM28-201ENST00000253024 SRGAP1Q7Z6B7 1085 aa23.95■■□□□ 1.43
TRIM28-201ENST00000253024 ELOA2Q8IYF1 753 aaPredicted RBP23.95■■□□□ 1.43
TRIM28-201ENST00000253024 ARHGEF1Q92888 912 aaKnown RBP23.95■■□□□ 1.43
TRIM28-201ENST00000253024 NGLY1Q96IV0 654 aa23.95■■□□□ 1.43
TRIM28-201ENST00000253024 LRP5O75197 1615 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 RCAN1P53805 252 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 CSGALNACT2Q8N6G5 542 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 COA7Q96BR5 231 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 ABCB6Q9NP58 842 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 CDC23Q9UJX2 597 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 DOCK2Q92608 1830 aa23.95■■□□□ 1.42
TRIM28-201ENST00000253024 BMP15O95972 392 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 KRT26Q7Z3Y9 468 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 LRRC47Q8N1G4 583 aaKnown RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 KANSL2Q9H9L4 492 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 REXO2Q9Y3B8 237 aaKnown RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 VSNL1P62760 191 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 ENOX2Q16206 610 aaKnown RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 PIGSQ96S52 555 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 TUBB4AP04350 444 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 PLEKP08567 350 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 IDEP14735 1019 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 RAD51AP2Q09MP3 1159 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 CLEC4GQ6UXB4 293 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 FUT8Q9BYC5 575 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 CCNL1Q9UK58 526 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 EPN1Q9Y6I3 576 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-201ENST00000253024 TIAM2Q8IVF5 1701 aa23.94■■□□□ 1.42
TRIM28-201ENST00000253024 SMCO2A6NFE2 343 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 ZNF185O15231 689 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 ARHGAP25P42331 645 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 MTA3Q9BTC8 594 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 LUC7L2Q9Y383 392 aaKnown RBP23.93■■□□□ 1.42
TRIM28-201ENST00000253024 BCORQ6W2J9 1755 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 MTIF2P46199 727 aaKnown RBP23.93■■□□□ 1.42
TRIM28-201ENST00000253024 LMAN1P49257 510 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 LRRC41Q15345 812 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 CCDC122Q5T0U0 273 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 CYP26C1Q6V0L0 522 aa23.93■■□□□ 1.42
TRIM28-201ENST00000253024 RIMBP2O15034 1052 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 BTDP43251 543 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 KIAA1328Q86T90 577 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 RABGGTAQ92696 567 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 NAPGQ99747 312 aaPredicted RBP23.92■■□□□ 1.42
TRIM28-201ENST00000253024 VPS18Q9P253 973 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 MAGEC2Q9UBF1 373 aaPredicted RBP23.92■■□□□ 1.42
TRIM28-201ENST00000253024 FGRP09769 529 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 CALML3P27482 149 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 CABP7Q86V35 215 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 POTEDQ86YR6 584 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 ANKRD13CQ8N6S4 541 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 GPCPD1Q9NPB8 672 aa23.92■■□□□ 1.42
TRIM28-201ENST00000253024 LIMA1Q9UHB6 759 aaKnown RBP23.92■■□□□ 1.42
TRIM28-201ENST00000253024 RCCD1A6NED2 376 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 NDUFA10O95299 355 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 SSBP05455 408 aaKnown RBP eCLIP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 GLIS3Q8NEA6 775 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 SMARCC1Q92922 1105 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 CCDC102AQ96A19 550 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 EYA3Q99504 573 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 FAM207AQ9NSI2 230 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 TBC1D7Q9P0N9 293 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 STRCQ7RTU9 1775 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 ATP1A1P05023 1023 aaKnown RBP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 MATR3P43243 847 aaKnown RBP eCLIP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 FAM193AP78312 1265 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 ANKRD40Q6AI12 368 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 TMTC1Q8IUR5 882 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 ADSSL1Q8N142 457 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 CCDC155Q8N6L0 562 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 MB21D1Q8N884 522 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 LACRTQ9GZZ8 138 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 STXBP3O00186 592 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 TBC1D8BQ0IIM8 1120 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 MXD3Q9BW11 206 aa23.91■■□□□ 1.42
TRIM28-201ENST00000253024 RTCBQ9Y3I0 505 aaKnown RBP23.91■■□□□ 1.42
TRIM28-201ENST00000253024 SPATA31A5Q5VU36 1347 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 SPATA31A7Q8IWB4 1347 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 POTEMA6NI47 508 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 USP17L5A8MUK1 530 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 LONP1P36776 959 aaKnown RBP23.9■■□□□ 1.42
TRIM28-201ENST00000253024 TSR1Q2NL82 804 aaKnown RBP23.9■■□□□ 1.42
TRIM28-201ENST00000253024 TEX11Q8IYF3 940 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 TBCKQ8TEA7 893 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 TUBGCP2Q9BSJ2 902 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 SMARCAL1Q9NZC9 954 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 UFL1O94874 794 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 RASA1P20936 1047 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 RFC4P35249 363 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 HNRNPH2P55795 449 aaKnown RBP23.9■■□□□ 1.42
TRIM28-201ENST00000253024 CACNB1Q02641 598 aaPredicted RBP23.9■■□□□ 1.42
TRIM28-201ENST00000253024 CEP95Q96GE4 821 aa23.9■■□□□ 1.42
TRIM28-201ENST00000253024 CTAGE15A4D2H0 777 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 PSMA7O14818 248 aa23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms