RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 SLF1Q9BQI6 1058 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 ZSWIM6Q9HCJ5 1215 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 PDLIM7Q9NR12 457 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 STXBP5LQ9Y2K9 1186 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 TTC41PQ6P2S7 1318 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 SALL3Q9BXA9 1300 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 ADAMTS4O75173 837 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 GNAT2P19087 354 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 ADCYAP1R1P41586 468 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 TRIM60Q495X7 471 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 FAM109BQ6ICB4 259 aaPredicted RBP12.32□□□□□ -0.44
VPS50-201ENST00000251739 MSL3Q8N5Y2 521 aaKnown RBP12.32□□□□□ -0.44
VPS50-201ENST00000251739 CEP95Q96GE4 821 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 FGD4Q96M96 766 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 XPNPEP3Q9NQH7 507 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 ATP11BQ9Y2G3 1177 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 RIPK3Q9Y572 518 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 PCDHB15Q9Y5E8 787 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 PRUNE2Q8WUY3 3088 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 SYNGAP1Q96PV0 1343 aa12.32□□□□□ -0.44
VPS50-201ENST00000251739 MINDY4BA8MYZ0 360 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 FOXP2O15409 715 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 RARBP10826 455 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 SNRNP48Q6IEG0 339 aaKnown RBP12.31□□□□□ -0.44
VPS50-201ENST00000251739 MAMDC4Q6UXC1 1216 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 PRPF38AQ8NAV1 312 aaKnown RBP12.31□□□□□ -0.44
VPS50-201ENST00000251739 GMCL1P1Q8NEA9 526 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 OTUD7AQ8TE49 926 aaPredicted RBP12.31□□□□□ -0.44
VPS50-201ENST00000251739 LBHD1Q9BQE6 289 aaPredicted RBP12.31□□□□□ -0.44
VPS50-201ENST00000251739 MKNK2Q9HBH9 465 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 SLC38A10Q9HBR0 1119 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 MTMR4Q9NYA4 1195 aa12.31□□□□□ -0.44
VPS50-201ENST00000251739 CHD9Q3L8U1 2897 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 VCANP13611 3396 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 TRIM43BA6NCK2 446 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 PRDM1O75626 825 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 SNAI1O95863 264 aaPredicted RBP12.3□□□□□ -0.44
VPS50-201ENST00000251739 AKR1A1P14550 325 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 TDO2P48775 406 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 TLE2Q04725 743 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 ZMYM1Q5SVZ6 1142 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 SH3RF1Q7Z6J0 888 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 TRIM43Q96BQ3 446 aaPredicted RBP12.3□□□□□ -0.44
VPS50-201ENST00000251739 LENG1Q96BZ8 264 aaPredicted RBP12.3□□□□□ -0.44
VPS50-201ENST00000251739 GUCD1Q96NT3 240 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 SEC62Q99442 399 aaKnown RBP12.3□□□□□ -0.44
VPS50-201ENST00000251739 PRKAG2Q9UGJ0 569 aa12.3□□□□□ -0.44
VPS50-201ENST00000251739 SPTBN5Q9NRC6 3674 aaKnown RBP12.3□□□□□ -0.44
VPS50-201ENST00000251739 A0A1W2PQ45 241 aaPredicted RBP12.29□□□□□ -0.44
VPS50-201ENST00000251739 A0A1W2PQY0 241 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 PATL2C9JE40 543 aaKnown RBP12.29□□□□□ -0.44
VPS50-201ENST00000251739 TTLL1O95922 423 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 PGK1P00558 417 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 OAZ1P54368 228 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 C9orf50Q5SZB4 431 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 CCSAPQ6IQ19 270 aaPredicted RBP12.29□□□□□ -0.44
VPS50-201ENST00000251739 STK11IPQ8N1F8 1099 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 KLHDC9Q8NEP7 349 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 FERMT2Q96AC1 680 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 ZNF287Q9HBT7 754 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 CLIP2Q9UDT6 1046 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 CNPY2Q9Y2B0 182 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS50-201ENST00000251739 PCDHGA4Q9Y5G9 962 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 SYNRGQ9UMZ2 1314 aa12.29□□□□□ -0.44
VPS50-201ENST00000251739 KIAA0355O15063 1070 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 ERC2O15083 957 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 ADCY6O43306 1168 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 RAD21O60216 631 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 ITGB8P26012 769 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 CST5P28325 142 aaPredicted RBP12.28□□□□□ -0.44
VPS50-201ENST00000251739 SHHQ15465 462 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 LRRFIP1Q32MZ4 808 aaKnown RBP12.28□□□□□ -0.44
VPS50-201ENST00000251739 RNF180Q86T96 592 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 LRRC47Q8N1G4 583 aaKnown RBP12.28□□□□□ -0.44
VPS50-201ENST00000251739 ZNF710Q8N1W2 664 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 BADQ92934 168 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 TSEN34Q9BSV6 310 aaKnown RBP12.28□□□□□ -0.44
VPS50-201ENST00000251739 KATNBL1Q9H079 304 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 PRDM5Q9NQX1 630 aaPredicted RBP12.28□□□□□ -0.44
VPS50-201ENST00000251739 FEM1BQ9UK73 627 aa12.28□□□□□ -0.44
VPS50-201ENST00000251739 LAMA4Q16363 1823 aa12.27□□□□□ -0.44
VPS50-201ENST00000251739 CLTBP09497 229 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 MX1P20591 662 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 NOVP48745 357 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 PPARAQ07869 468 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 ANKRD33Q7Z3H0 272 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 CHST13Q8NET6 341 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 GMCL1Q96IK5 515 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 TOX2Q96NM4 488 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 NACAP1Q9BZK3 213 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 UPF3AQ9H1J1 476 aaKnown RBP12.27□□□□□ -0.45
VPS50-201ENST00000251739 RAVER2Q9HCJ3 691 aaKnown RBP12.27□□□□□ -0.45
VPS50-201ENST00000251739 FBXO40Q9UH90 709 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 MYO9BQ13459 2157 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 ZNF536O15090 1300 aa12.27□□□□□ -0.45
VPS50-201ENST00000251739 MYADML2A6NDP7 307 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms