RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 LGR6Q9HBX8 967 aa9.44□□□□□ -0.9
CXCR4-201ENST00000241393 TRPM3Q9HCF6 1732 aaPredicted RBP9.44□□□□□ -0.9
CXCR4-201ENST00000241393 SLFN14P0C7P3 912 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 NLRP12P59046 1061 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 FAM160A1Q05DH4 1040 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 CWF19L2Q2TBE0 894 aaKnown RBP9.43□□□□□ -0.9
CXCR4-201ENST00000241393 RASGRP4Q8TDF6 673 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 GATAD2BQ8WXI9 593 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 CHPF2Q9P2E5 772 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 TTC41PQ6P2S7 1318 aa9.43□□□□□ -0.9
CXCR4-201ENST00000241393 CRYBG1Q9Y4K1 1723 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 PI4KAP2A4QPH2 592 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 SURF6O75683 361 aaKnown RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 ELNP15502 786 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 COL9A3Q14050 684 aaPredicted RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 DUOXA2Q1HG44 320 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 FAM196AQ6ZSG2 479 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 ERC1Q8IUD2 1116 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 PI4KAP1Q8N8J0 262 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 JARID2Q92833 1246 aaPredicted RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 SCARF2Q96GP6 870 aaPredicted RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 TANGO6Q9C0B7 1094 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 STRIP2Q9ULQ0 834 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 ADCY9O60503 1353 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 SRGAP3O43295 1099 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 GREM1O60565 184 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 EIF2S2P20042 333 aaKnown RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 NEK4P51957 841 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 ZNF445P59923 1031 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 MPP2Q14168 576 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 LCE2AQ5TA79 106 aaPredicted RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 FBXL19Q6PCT2 694 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 LINC00114Q6XXX2 140 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 ILDR2Q71H61 639 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 PDZD3Q86UT5 571 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 CNTROBQ8N137 903 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 PI4K2BQ8TCG2 481 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 NKD1Q969G9 470 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 RILPL2Q969X0 211 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 TMX3Q96JJ7 454 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 NACC1Q96RE7 527 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 MRPL18Q9H0U6 180 aaKnown RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 RAD18Q9NS91 495 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 HYPKQ9NX55 129 aa9.42□□□□□ -0.9
CXCR4-201ENST00000241393 DDX49Q9Y6V7 483 aaKnown RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 SIPA1L3O60292 1781 aaPredicted RBP9.42□□□□□ -0.9
CXCR4-201ENST00000241393 UTYO14607 1347 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 RGPD2P0DJD1 1756 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 PXDNQ92626 1479 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 GLRX3O76003 335 aaKnown RBP9.41□□□□□ -0.9
CXCR4-201ENST00000241393 ATP2B1P20020 1258 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 HSPA4P34932 840 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 IGF2-ASQ6U949 168 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 KSR2Q6VAB6 950 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 ALYREFQ86V81 257 aaKnown RBP9.41□□□□□ -0.9
CXCR4-201ENST00000241393 LRRC3Q9BY71 257 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 LMBRD1Q9NUN5 540 aa9.41□□□□□ -0.9
CXCR4-201ENST00000241393 RAD50Q92878 1312 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 SYNGAP1Q96PV0 1343 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 C1orf167Q5SNV9 1468 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 DLL1O00548 723 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 SGSM2O43147 1006 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 DDX58O95786 925 aaKnown RBP9.4□□□□□ -0.9
CXCR4-201ENST00000241393 NBPF7P0C2Y1 421 aaPredicted RBP9.4□□□□□ -0.9
CXCR4-201ENST00000241393 HOXB4P17483 251 aaPredicted RBP9.4□□□□□ -0.9
CXCR4-201ENST00000241393 DNAJA1P31689 397 aaKnown RBP9.4□□□□□ -0.9
CXCR4-201ENST00000241393 TSHZ3Q63HK5 1081 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 HDXQ7Z353 690 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 GALNT11Q8NCW6 608 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 LINS1Q8NG48 757 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 LRRC59Q96AG4 307 aaKnown RBP9.4□□□□□ -0.9
CXCR4-201ENST00000241393 ARMC5Q96C12 935 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 TRIM11Q96F44 468 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 GMLQ99445 158 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 DCCP43146 1447 aa9.4□□□□□ -0.9
CXCR4-201ENST00000241393 LOC100289279A0A1B0GTE1 492 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 KCNQ3O43525 872 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 DEAF1O75398 565 aaPredicted RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 TNNI2P48788 182 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 RPL6Q02878 288 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 SEPT6Q14141 434 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 EXOSC6Q5RKV6 272 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 HGSNATQ68CP4 663 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 MCTP1Q6DN14 999 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 MPRIPQ6WCQ1 1025 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 KRT28Q7Z3Y7 464 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 UNC5CLQ8IV45 518 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 CLASRPQ8N2M8 674 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ZGPATQ8N5A5 531 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 GRIN3AQ8TCU5 1115 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 STK35Q8TDR2 534 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 RUFY2Q8WXA3 655 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 GPATCH3Q96I76 525 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ORAI2Q96SN7 254 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 RUSC1Q9BVN2 902 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 PANK2Q9BZ23 570 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 NRSN2Q9GZP1 204 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 IL1RAPL2Q9NP60 686 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 DDX21Q9NR30 783 aaKnown RBP eCLIP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms