RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MTMR7Q9Y216 660 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 MYH8P13535 1937 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 USP17L3A6NCW0 530 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 USP17L4A6NCW7 530 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 LDHBP07195 334 aaKnown RBP21.03■□□□□ 0.96
CPSF3-201ENST00000238112 PMS1P54277 932 aaKnown RBP21.03■□□□□ 0.96
CPSF3-201ENST00000238112 SMIM5Q71RC9 77 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 USP17L1Q7RTZ2 530 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 BARHL2Q9NY43 387 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 CALCOCO1Q9P1Z2 691 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 CNTNAP4Q9C0A0 1308 aa21.02■□□□□ 0.96
CPSF3-201ENST00000238112 RHOBTB3O94955 611 aa21.02■□□□□ 0.96
CPSF3-201ENST00000238112 GPS2Q13227 327 aa21.02■□□□□ 0.96
CPSF3-201ENST00000238112 SEMA3FQ13275 785 aa21.02■□□□□ 0.96
CPSF3-201ENST00000238112 ZNF444Q8N0Y2 327 aaPredicted RBP21.02■□□□□ 0.96
CPSF3-201ENST00000238112 PNKPQ96T60 521 aa21.02■□□□□ 0.96
CPSF3-201ENST00000238112 MKRN1Q9UHC7 482 aaKnown RBP21.02■□□□□ 0.96
CPSF3-201ENST00000238112 AHDC1Q5TGY3 1603 aaPredicted RBP21.02■□□□□ 0.96
CPSF3-201ENST00000238112 MAP2K7O14733 419 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 BARGINQ6ZT62 677 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 CCDC24Q8N4L8 307 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 GIMAP8Q8ND71 665 aaPredicted RBP21.01■□□□□ 0.95
CPSF3-201ENST00000238112 SH3RF3Q8TEJ3 882 aaPredicted RBP21.01■□□□□ 0.95
CPSF3-201ENST00000238112 NOC3LQ8WTT2 800 aaKnown RBP21.01■□□□□ 0.95
CPSF3-201ENST00000238112 KBTBD4Q9NVX7 518 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 MYO6Q9UM54 1294 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 GUCA1BQ9UMX6 200 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 STX8Q9UNK0 236 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 STXBP3O00186 592 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 KLRC4O43908 158 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 RHOXF2BP0C7M4 288 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 PRPHP41219 470 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 BEND6Q5SZJ8 279 aaPredicted RBP21.01■□□□□ 0.95
CPSF3-201ENST00000238112 TPTE2Q6XPS3 522 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 HDXQ7Z353 690 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 DNAJC7Q99615 494 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 RHOXF2Q9BQY4 288 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 TCP11L1Q9NUJ3 509 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 NARFQ9UHQ1 456 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 NRAPQ86VF7 1730 aa21.01■□□□□ 0.95
CPSF3-201ENST00000238112 BAG3O95817 575 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 WDR66Q8TBY9 1149 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 CCDC47Q96A33 483 aaKnown RBP21■□□□□ 0.95
CPSF3-201ENST00000238112 CUEDC2Q9H467 287 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 HAUS4Q9H6D7 363 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 SRP68Q9UHB9 627 aaKnown RBP21■□□□□ 0.95
CPSF3-201ENST00000238112 CAPN11Q9UMQ6 739 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 CCDC88AQ3V6T2 1871 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 ROBO3Q96MS0 1386 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 CYTH3O43739 400 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 TFRCP02786 760 aaKnown RBP21■□□□□ 0.95
CPSF3-201ENST00000238112 DNM2P50570 870 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 TXLNBQ8N3L3 684 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 ZNF507Q8TCN5 953 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 LZTS2Q9BRK4 669 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 MAGEF1Q9HAY2 307 aa21■□□□□ 0.95
CPSF3-201ENST00000238112 REXO2Q9Y3B8 237 aaKnown RBP21■□□□□ 0.95
CPSF3-201ENST00000238112 ZPR1O75312 459 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 GSTO1P78417 241 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 MCM6Q14566 821 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 DHTKD1Q96HY7 919 aaPredicted RBP20.99■□□□□ 0.95
CPSF3-201ENST00000238112 GBP3Q9H0R5 595 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 TUBBP07437 444 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 AMPD2Q01433 879 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 SLC35G1Q2M3R5 365 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 TTI2Q6NXR4 508 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 CABP7Q86V35 215 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 CSGALNACT2Q8N6G5 542 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 AK8Q96MA6 479 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 ANKIB1Q9P2G1 1089 aa20.99■□□□□ 0.95
CPSF3-201ENST00000238112 B4DLN1 442 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 EIF3JO75822 258 aaKnown RBP20.98■□□□□ 0.95
CPSF3-201ENST00000238112 ST5P78524 1137 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 TGFBRAP1Q8WUH2 860 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 TMEM47Q9BQJ4 181 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 EXOC1Q9NV70 894 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 TRIM10Q9UDY6 481 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 BICDL2A1A5D9 508 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 PALM3A6NDB9 673 aaPredicted RBP20.98■□□□□ 0.95
CPSF3-201ENST00000238112 PLCG1P19174 1290 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 NAPAP54920 295 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 KRT83P78385 493 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 SLC44A5Q8NCS7 719 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 TUBGCP2Q9BSJ2 902 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 ABCB6Q9NP58 842 aa20.98■□□□□ 0.95
CPSF3-201ENST00000238112 IRS2Q9Y4H2 1338 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 ZBTB22O15209 634 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 OR52Z1P0C646 297 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 SRGNP10124 158 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 TRIM21P19474 475 aaKnown RBP20.97■□□□□ 0.95
CPSF3-201ENST00000238112 DIXDC1Q155Q3 683 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 NCAPH2Q6IBW4 605 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 KRT25Q7Z3Z0 450 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 ZNF287Q9HBT7 754 aa20.97■□□□□ 0.95
CPSF3-201ENST00000238112 ZNHIT6Q9NWK9 470 aaKnown RBP20.97■□□□□ 0.95
CPSF3-201ENST00000238112 KLRF2D3W0D1 207 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 H3BQF6 201 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 PSMD14O00487 310 aa20.96■□□□□ 0.95
CPSF3-201ENST00000238112 CCNT1O60563 726 aaKnown RBP20.96■□□□□ 0.95
CPSF3-201ENST00000238112 GOLGA8HP0CJ92 632 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms