RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PFDN1O60925 122 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 CHEK2O96017 543 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 DNA2P51530 1060 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 RAP1GDS1P52306 607 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 MKRN3Q13064 507 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 TMEM132EQ6IEE7 984 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 TRIM50Q86XT4 487 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PHKBQ93100 1093 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 MYD88Q99836 296 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 NACA2Q9H009 215 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 IFNKQ9P0W0 207 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 HEXIM1O94992 359 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 APOA4P06727 396 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PAMP19021 973 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ANO1Q5XXA6 986 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ANKRD27Q96NW4 1050 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 SLC4A4Q9Y6R1 1079 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ATP7AQ04656 1500 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ARHGEF9O43307 516 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 MAP3K7O43318 606 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 CA4P22748 312 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 GCKP35557 465 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 TTC19Q6DKK2 380 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 NDUFAF2Q8N183 169 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ENOX1Q8TC92 643 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 GIPC2Q8TF65 315 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 CLSTN2Q9H4D0 955 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ARHGEF35A5YM69 484 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 NOP56O00567 594 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 HSPA2P54652 639 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 STX1BP61266 288 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 DSCC1Q9BVC3 393 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 GPHNQ9NQX3 736 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 SYNGAP1Q96PV0 1343 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 C6orf229H3BNL8 230 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ZNF202O95125 648 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 HARSP12081 509 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 TTLL7Q6ZT98 887 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ZNF274Q96GC6 653 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 C14orf93Q9H972 538 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 LZTFL1Q9NQ48 299 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 DIABLOQ9NR28 239 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 C1orf112Q9NSG2 853 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PLCH2O75038 1416 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 XRCC6P12956 609 aaKnown RBP eCLIP6.63□□□□□ -1.353e-6■■■■□ 20.9
VPS13D-201ENST00000011700 AFMP43652 599 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 NLRP12P59046 1061 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 KIF23Q02241 960 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ODR4Q5SWX8 454 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ST13P4Q8IZP2 240 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 NECAB1Q8N987 351 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PREX2Q70Z35 1606 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CDC42BPGQ6DT37 1551 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 AFDNP55196 1824 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 RASSF10A6NK89 507 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 SLC26A4O43511 780 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 OPHN1O60890 802 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 HPDP32754 393 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 E2F5Q15329 346 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 SLC9C2Q5TAH2 1124 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 GIMAP6Q6P9H5 292 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ARHGEF25Q86VW2 580 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 LRRC8CQ8TDW0 803 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 TFIP11Q9UBB9 837 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ADCY2Q08462 1091 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 TRADDQ15628 312 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 AKNAD1Q5T1N1 836 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 OR9Q1Q8NGQ5 310 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 UTP6Q9NYH9 597 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 SLC8A2Q9UPR5 921 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 MED7O43513 233 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CIITAP33076 1130 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 PDE6CP51160 858 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 MMEL1Q495T6 779 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 STX19Q8N4C7 294 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CCDC197Q8NCU1 140 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 BRF1Q92994 677 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 GSDMAQ96QA5 445 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 MXD3Q9BW11 206 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ZC3H13Q5T200 1668 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 STAM2O75886 525 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 PYGMP11217 842 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 LONP1P36776 959 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 KLHL30Q0D2K2 578 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CREB3L3Q68CJ9 461 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 TERB1Q8NA31 727 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 POLR3CQ9BUI4 534 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CCNT1O60563 726 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 RPS6KB1P23443 525 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 DCAF17Q5H9S7 520 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ANKFY1Q9P2R3 1169 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 SLC12A6Q9UHW9 1150 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 AFG3L2Q9Y4W6 797 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 GAP43P17677 238 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 FAM186BQ8IYM0 893 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 MRPL44Q9H9J2 332 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ABCC12Q96J65 1359 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 GABPAQ06546 454 aa6.62□□□□□ -1.35
VPS13D-201ENST00000011700 CAPRIN1Q14444 709 aaKnown RBP6.62□□□□□ -1.35
VPS13D-201ENST00000011700 ATP6V0A4Q9HBG4 840 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms