RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	PC	P11498	1178 aa	Known RBP	19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	PAK1	Q13153	545 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	SBK1	Q52WX2	424 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	TPTE2	Q6XPS3	522 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	CHP1	Q99653	195 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	PCDHA4	Q9UN74	947 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	LAMB1	P07942	1786 aa		19.01	■□□□□ 0.63
PHGDH-223	ENST00000641597	KCNJ18	B7U540	433 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	PES1	O00541	588 aa	Known RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	GTPBP6	O43824	516 aa	Predicted RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	ZRANB2	O95218	330 aa	Known RBP eCLIP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TSPY3	P0CV98	308 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TSPY8	P0CW00	308 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	COPB1	P53618	953 aa	Known RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	KCNJ12	Q14500	433 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TERF2	Q15554	542 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	ZNF569	Q5MCW4	686 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	CCDC34	Q96HJ3	373 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	VAT1L	Q9HCJ6	419 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TNRC6C	Q9HCJ0	1690 aa	Known RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TUBB4A	P04350	444 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	HPS3	Q969F9	1004 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	NUP88	Q99567	741 aa	Predicted RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	TMEM47	Q9BQJ4	181 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	ANKRD2	Q9GZV1	360 aa		19	■□□□□ 0.63
PHGDH-223	ENST00000641597	ZCCHC17	Q9NP64	241 aa	Known RBP	19	■□□□□ 0.63
PHGDH-223	ENST00000641597	CCDC194	A0A1B0GVG4	234 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	RPS6KA4	O75676	772 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	KIF5B	P33176	963 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	TCP11X2	Q5H9J9	407 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	SLF1	Q9BQI6	1058 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	CCNL1	Q9UK58	526 aa	Predicted RBP	18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	CNTNAP4	Q9C0A0	1308 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597		M0R2N6	131 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	USP17L2	Q6R6M4	530 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	TMCO3	Q6UWJ1	677 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	GPIHBP1	Q8IV16	184 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	PARD6B	Q9BYG5	372 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	DISC1	Q9NRI5	854 aa		18.99	■□□□□ 0.63
PHGDH-223	ENST00000641597	POLR3G	O15318	223 aa	Predicted RBP	18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	FILIP1L	Q4L180	1135 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	ZNF658	Q5TYW1	1059 aa	Predicted RBP	18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	NYX	Q9GZU5	481 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	ABHD10	Q9NUJ1	306 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	RWDD2A	Q9UIY3	292 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	CCDC88A	Q3V6T2	1871 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	UBXN1	Q04323	297 aa		18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	RSRC2	Q7L4I2	434 aa	Known RBP	18.98	■□□□□ 0.63
PHGDH-223	ENST00000641597	ERICH4	A6NGS2	130 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	STXBP3	O00186	592 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	RASA1	P20936	1047 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	TRAPPC10	P48553	1259 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	BMS1	Q14692	1282 aa	Known RBP	18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	GRM4	Q14833	912 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	CLEC10A	Q8IUN9	316 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	SLC35F6	Q8N357	371 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	NGLY1	Q96IV0	654 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	NOL10	Q9BSC4	688 aa	Known RBP	18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	LIMA1	Q9UHB6	759 aa	Known RBP	18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	KLK7	P49862	253 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	DTHD1	Q6ZMT9	781 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	CTAGE1	Q96RT6	745 aa		18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	RTCB	Q9Y3I0	505 aa	Known RBP	18.97	■□□□□ 0.63
PHGDH-223	ENST00000641597	GOLGA6L9	A6NEM1	432 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	TBC1D8	O95759	1140 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	KRT9	P35527	623 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	DGKH	Q86XP1	1220 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	SRRT	Q9BXP5	876 aa	Known RBP	18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	KLRF2	D3W0D1	207 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	KLRC4	O43908	158 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	PARP1	P09874	1014 aa	Known RBP	18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	GABPB1	Q06547	395 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	LETM2	Q2VYF4	491 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	CC2D1A	Q6P1N0	951 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	UBA5	Q9GZZ9	404 aa		18.96	■□□□□ 0.63
PHGDH-223	ENST00000641597	SLURP2	P0DP57	97 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	ERCC3	P19447	782 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	CALML3	P27482	149 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	LONP1	P36776	959 aa	Known RBP	18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	REXO2	Q9Y3B8	237 aa	Known RBP	18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	TTC26	A0AVF1	554 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	LRRC10B	A6NIK2	292 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	UBA7	P41226	1012 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	ARHGAP25	P42331	645 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	TXNRD1	Q16881	649 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	CNGA4	Q8IV77	575 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	ADSSL1	Q8N142	457 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	UIMC1	Q96RL1	719 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	SBF2	Q86WG5	1849 aa		18.95	■□□□□ 0.62
PHGDH-223	ENST00000641597	BTD	P43251	543 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	GYS2	P54840	703 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	GPSM2	P81274	684 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	ARL6IP4	Q66PJ3	421 aa	Known RBP	18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	SUGCT	Q9HAC7	445 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	TMEM260	Q9NX78	707 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	BARHL2	Q9NY43	387 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	KIF5C	O60282	957 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	FCER1A	P12319	257 aa		18.94	■□□□□ 0.62
PHGDH-223	ENST00000641597	PLCG1	P19174	1290 aa		18.94	■□□□□ 0.62

Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms