RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 NR5A1Q13285 461 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 PNMA8AQ86V59 439 aaPredicted RBP21.21■□□□□ 0.99
CLN3-254ENST00000637050 CCDC148Q8NFR7 591 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 LEO1Q8WVC0 666 aaPredicted RBP21.21■□□□□ 0.99
CLN3-254ENST00000637050 BRMS1Q9HCU9 246 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 FZD1Q9UP38 647 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 PNMA6FA0A0J9YX94 578 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 USP17L10C9JJH3 530 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 USP2O75604 605 aaPredicted RBP21.2■□□□□ 0.98
CLN3-254ENST00000637050 NOL9Q5SY16 702 aaKnown RBP21.2■□□□□ 0.98
CLN3-254ENST00000637050 DLK2Q6UY11 383 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 SPICE1Q8N0Z3 855 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 TNFRSF25Q93038 417 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 ZKSCAN4Q969J2 545 aaPredicted RBP21.2■□□□□ 0.98
CLN3-254ENST00000637050 SPATA32Q96LK8 384 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 KIAA1683Q9H0B3 1180 aa21.2■□□□□ 0.98
CLN3-254ENST00000637050 ISY1Q9ULR0 285 aaKnown RBP21.2■□□□□ 0.98
CLN3-254ENST00000637050 GALNT17Q6IS24 598 aa21.19■□□□□ 0.98
CLN3-254ENST00000637050 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.19■□□□□ 0.98
CLN3-254ENST00000637050 CCDC12Q8WUD4 166 aaPredicted RBP21.19■□□□□ 0.98
CLN3-254ENST00000637050 WDR18Q9BV38 432 aa21.19■□□□□ 0.98
CLN3-254ENST00000637050 FTOQ9C0B1 505 aaKnown RBP eCLIP21.19■□□□□ 0.98
CLN3-254ENST00000637050 RTEL1Q9NZ71 1219 aa21.19■□□□□ 0.98
CLN3-254ENST00000637050 RCOR1Q9UKL0 485 aa21.19■□□□□ 0.98
CLN3-254ENST00000637050 TMEM232C9JQI7 657 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 ZBTB5O15062 677 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 PTPRAP18433 802 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 EAPPQ56P03 285 aaPredicted RBP21.18■□□□□ 0.98
CLN3-254ENST00000637050 DAGLBQ8NCG7 672 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 PICK1Q9NRD5 415 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 POLR3EQ9NVU0 708 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 PCDHA4Q9UN74 947 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 GADD45BO75293 160 aaPredicted RBP21.18■□□□□ 0.98
CLN3-254ENST00000637050 ZYXQ15942 572 aaKnown RBP21.18■□□□□ 0.98
CLN3-254ENST00000637050 KLHL40Q2TBA0 621 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 SYDE2Q5VT97 1194 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 FEZ1Q99689 392 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 ZMYND12Q9H0C1 365 aa21.18■□□□□ 0.98
CLN3-254ENST00000637050 DDX49Q9Y6V7 483 aaKnown RBP21.18■□□□□ 0.98
CLN3-254ENST00000637050 PAPPA2Q9BXP8 1791 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 PLA2G6O60733 806 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 NASPP49321 788 aaPredicted RBP21.17■□□□□ 0.98
CLN3-254ENST00000637050 NAPAP54920 295 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 UBE2HP62256 183 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 CEBPZQ03701 1054 aaKnown RBP21.17■□□□□ 0.98
CLN3-254ENST00000637050 FAM83BQ5T0W9 1011 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 BLIDQ8IZY5 108 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 GPT2Q8TD30 523 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 LPAR1Q92633 364 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 CDCA5Q96FF9 252 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 AS3MTQ9HBK9 375 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 CLIC4Q9Y696 253 aa21.17■□□□□ 0.98
CLN3-254ENST00000637050 ESYT2A0FGR8 921 aa21.16■□□□□ 0.98
CLN3-254ENST00000637050 M0R2N6 131 aa21.16■□□□□ 0.98
CLN3-254ENST00000637050 PPP1R12BO60237 982 aaPredicted RBP21.16■□□□□ 0.98
CLN3-254ENST00000637050 PPP1R11O60927 126 aaPredicted RBP21.16■□□□□ 0.98
CLN3-254ENST00000637050 YEATS4O95619 227 aa21.16■□□□□ 0.98
CLN3-254ENST00000637050 ANO1Q5XXA6 986 aa21.16■□□□□ 0.98
CLN3-254ENST00000637050 ADAMTS3O15072 1205 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 MBD3O95983 291 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 STAT2P52630 851 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 PRKG1Q13976 671 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 QRICH1Q2TAL8 776 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 RILPL1Q5EBL4 403 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 PPP1R18Q6NYC8 613 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 TOB1P50616 345 aaPredicted RBP21.15■□□□□ 0.98
CLN3-254ENST00000637050 USP14P54578 494 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 MAP3K9P80192 1104 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 IKQ13123 557 aaPredicted RBP21.15■□□□□ 0.98
CLN3-254ENST00000637050 CDC37Q16543 378 aaPredicted RBP21.15■□□□□ 0.98
CLN3-254ENST00000637050 EARS2Q5JPH6 523 aaKnown RBP21.15■□□□□ 0.98
CLN3-254ENST00000637050 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.15■□□□□ 0.98
CLN3-254ENST00000637050 LINC00301Q8NCQ3 95 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 ZNF280CQ8ND82 737 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 CHURC1Q8WUH1 139 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 COA7Q96BR5 231 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 C6orf50Q9HD87 102 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 PRR12Q9ULL5 1215 aa21.15■□□□□ 0.98
CLN3-254ENST00000637050 PHIPQ8WWQ0 1821 aa21.14■□□□□ 0.98
CLN3-254ENST00000637050 SMCO2A6NFE2 343 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 WDR46O15213 610 aaKnown RBP21.14■□□□□ 0.97
CLN3-254ENST00000637050 GNA11P29992 359 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 NF2P35240 595 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 SPP2Q13103 211 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 MTMR2Q13614 643 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 FAM160B2Q86V87 743 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 FEM1BQ9UK73 627 aa21.14■□□□□ 0.97
CLN3-254ENST00000637050 FAM205CA6NFA0 338 aa21.13■□□□□ 0.97
CLN3-254ENST00000637050 IREB2P48200 963 aaKnown RBP21.13■□□□□ 0.97
CLN3-254ENST00000637050 BACE1P56817 501 aa21.13■□□□□ 0.97
CLN3-254ENST00000637050 SNCAIPQ9Y6H5 919 aa21.13■□□□□ 0.97
CLN3-254ENST00000637050 ZHX2Q9Y6X8 837 aa21.13■□□□□ 0.97
CLN3-254ENST00000637050 VGLL4Q14135 290 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 SLC39A14Q15043 492 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 SF3A1Q15459 793 aaKnown RBP21.12■□□□□ 0.97
CLN3-254ENST00000637050 NOM1Q5C9Z4 860 aaKnown RBP21.12■□□□□ 0.97
CLN3-254ENST00000637050 PGBD1Q96JS3 809 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 EMILIN3Q9NT22 766 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 PCDHA6Q9UN73 950 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 PCDHA8Q9Y5H6 950 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms