RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SYNPO2Q9UMS6 1093 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 PCDHB6Q9Y5E3 794 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 GOLGA6L3A6NEY3 463 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 PPP6R2O75170 966 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 NR1I2O75469 434 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 ATP2B1P20020 1258 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 HIRAP54198 1017 aaPredicted RBP19.35■□□□□ 0.69
CLN3-252ENST00000636907 NAPAP54920 295 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 GALNT17Q6IS24 598 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 APOBEC3FQ8IUX4 373 aaKnown RBP19.35■□□□□ 0.69
CLN3-252ENST00000636907 ACER1Q8TDN7 264 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 CCDC12Q8WUD4 166 aaPredicted RBP19.35■□□□□ 0.69
CLN3-252ENST00000636907 NUP88Q99567 741 aaPredicted RBP19.35■□□□□ 0.69
CLN3-252ENST00000636907 DACT1Q9NYF0 836 aa19.35■□□□□ 0.69
CLN3-252ENST00000636907 A0A1W2PQ27 194 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 A0A1W2PQ64 194 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 A0A1W2PQD8 194 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 USP17L10C9JJH3 530 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 M0R2N6 131 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 AXDND1Q5T1B0 1012 aaPredicted RBP19.34■□□□□ 0.69
CLN3-252ENST00000636907 NBPF12Q5TAG4 269 aaPredicted RBP19.34■□□□□ 0.69
CLN3-252ENST00000636907 FSIP1Q8NA03 581 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 MTMR8Q96EF0 704 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 ZMYND12Q9H0C1 365 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 TMX2Q9Y320 296 aa19.34■□□□□ 0.69
CLN3-252ENST00000636907 hCG_1984214I3L0E3 225 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 LRSAM1Q6UWE0 723 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 PIK3AP1Q6ZUJ8 805 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 ZNF713Q8N859 430 aaPredicted RBP19.33■□□□□ 0.69
CLN3-252ENST00000636907 JMYQ8N9B5 988 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 RASGRP4Q8TDF6 673 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.33■□□□□ 0.69
CLN3-252ENST00000636907 DDX19AQ9NUU7 478 aaKnown RBP19.33■□□□□ 0.69
CLN3-252ENST00000636907 GGA3Q9NZ52 723 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 NOL7Q9UMY1 257 aaKnown RBP19.33■□□□□ 0.69
CLN3-252ENST00000636907 ATAD5Q96QE3 1844 aa19.33■□□□□ 0.69
CLN3-252ENST00000636907 PNMA6FA0A0J9YX94 578 aa19.33■□□□□ 0.68
CLN3-252ENST00000636907 SMCO2A6NFE2 343 aa19.33■□□□□ 0.68
CLN3-252ENST00000636907 ASNSP08243 561 aa19.33■□□□□ 0.68
CLN3-252ENST00000636907 MRPS27Q92552 414 aaKnown RBP19.33■□□□□ 0.68
CLN3-252ENST00000636907 PCDHA6Q9UN73 950 aa19.33■□□□□ 0.68
CLN3-252ENST00000636907 PCDHA8Q9Y5H6 950 aa19.33■□□□□ 0.68
CLN3-252ENST00000636907 TRIM75PA6NK02 468 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 WNT7AO00755 349 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 ZBTB5O15062 677 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 PPP1R11O60927 126 aaPredicted RBP19.32■□□□□ 0.68
CLN3-252ENST00000636907 BMP3P12645 472 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 KIAA1755Q5JYT7 1200 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 CCDC73Q6ZRK6 1079 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 CCDC84Q86UT8 332 aaPredicted RBP19.32■□□□□ 0.68
CLN3-252ENST00000636907 COA7Q96BR5 231 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 NUP62CLQ9H1M0 184 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 C6orf50Q9HD87 102 aa19.32■□□□□ 0.68
CLN3-252ENST00000636907 LETM1O95202 739 aaPredicted RBP19.31■□□□□ 0.68
CLN3-252ENST00000636907 LMOD1P29536 600 aaPredicted RBP19.31■□□□□ 0.68
CLN3-252ENST00000636907 SNW1Q13573 536 aaKnown RBP19.31■□□□□ 0.68
CLN3-252ENST00000636907 PRAMEF18Q5VWM3 479 aa19.31■□□□□ 0.68
CLN3-252ENST00000636907 SPICE1Q8N0Z3 855 aa19.31■□□□□ 0.68
CLN3-252ENST00000636907 ENGASEQ8NFI3 743 aa19.31■□□□□ 0.68
CLN3-252ENST00000636907 GLIS2Q9BZE0 524 aaPredicted RBP19.31■□□□□ 0.68
CLN3-252ENST00000636907 GOPCQ9HD26 462 aa19.31■□□□□ 0.68
CLN3-252ENST00000636907 CEP131Q9UPN4 1083 aa19.31■□□□□ 0.68
CLN3-252ENST00000636907 A0A1B0GVL5 298 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 ESYT2A0FGR8 921 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 TMEM232C9JQI7 657 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 GNA11P29992 359 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 TRAPPC10P48553 1259 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 FAM160A1Q05DH4 1040 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 CAMK4Q16566 473 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 TTC38Q5R3I4 469 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 CLSTN2Q9H4D0 955 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 ADARB2Q9NS39 739 aaKnown RBP19.3■□□□□ 0.68
CLN3-252ENST00000636907 CCDC194A0A1B0GVG4 234 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 DCAF15Q66K64 600 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 PPP1R18Q6NYC8 613 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 KRI1Q8N9T8 703 aaKnown RBP19.3■□□□□ 0.68
CLN3-252ENST00000636907 CLIC6Q96NY7 704 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 SH2D4AQ9H788 454 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 VCPKMTQ9H867 229 aa19.3■□□□□ 0.68
CLN3-252ENST00000636907 FBXO2Q9UK22 296 aaPredicted RBP19.3■□□□□ 0.68
CLN3-252ENST00000636907 CTNND1O60716 968 aaKnown RBP19.29■□□□□ 0.68
CLN3-252ENST00000636907 CUTAO60888 179 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 CMA1P23946 247 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 NDUFA8P51970 172 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 ZNF174Q15697 407 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 CDC37Q16543 378 aaPredicted RBP19.29■□□□□ 0.68
CLN3-252ENST00000636907 QRICH1Q2TAL8 776 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 SYDE2Q5VT97 1194 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 SHC4Q6S5L8 630 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 BTNL9Q6UXG8 535 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 ZNF341Q9BYN7 854 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 MRVI1Q9Y6F6 885 aa19.29■□□□□ 0.68
CLN3-252ENST00000636907 MORC2Q9Y6X9 1032 aaPredicted RBP19.29■□□□□ 0.68
CLN3-252ENST00000636907 PTPREP23469 700 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 INPP5BP32019 993 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 IKQ13123 557 aaPredicted RBP19.28■□□□□ 0.68
CLN3-252ENST00000636907 ZYXQ15942 572 aaKnown RBP19.28■□□□□ 0.68
CLN3-252ENST00000636907 GPR162Q16538 588 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 FAM83BQ5T0W9 1011 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 FMR1NBQ8N0W7 255 aaPredicted RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms