RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FEZ1Q99689 392 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 CPVLQ9H3G5 476 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 EMILIN3Q9NT22 766 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 CEP350Q5VT06 3117 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 OTOFQ9HC10 1997 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 H3BQV1 296 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 RAD21O60216 631 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 SCG2P13521 617 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 PPATQ06203 517 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 TTLL12Q14166 644 aaPredicted RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 SH3D19Q5HYK7 790 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 IFFO2Q5TF58 517 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 ADGRF4Q8IZF3 695 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 SPICE1Q8N0Z3 855 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 FAM177A1Q8N128 213 aaPredicted RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 RBM46Q8TBY0 533 aaKnown RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 RRP36Q96EU6 259 aaKnown RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 NUP88Q99567 741 aaPredicted RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 JMJD4Q9H9V9 463 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 SPDYE5A6NIY4 337 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 WDR46O15213 610 aaKnown RBP16.31■□□□□ 0.2
CLN3-242ENST00000635958 MTMR2Q13614 643 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 SH3GLB2Q9NR46 395 aa16.31■□□□□ 0.2
CLN3-242ENST00000635958 hCG_1642624A0A1W2PR95 340 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 VPS37CA5D8V6 355 aaPredicted RBP16.3■□□□□ 0.2
CLN3-242ENST00000635958 TMEM232C9JQI7 657 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 F13A1P00488 732 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 SLC16A2P36021 539 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 NASPP49321 788 aaPredicted RBP16.3■□□□□ 0.2
CLN3-242ENST00000635958 ZYXQ15942 572 aaKnown RBP16.3■□□□□ 0.2
CLN3-242ENST00000635958 FAM83BQ5T0W9 1011 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 KRT40Q6A162 431 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 CHURC1Q8WUH1 139 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 CLMNQ96JQ2 1002 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 GJB4Q9NTQ9 266 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 FEM1BQ9UK73 627 aa16.3■□□□□ 0.2
CLN3-242ENST00000635958 PNMA6FA0A0J9YX94 578 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 TRIM75PA6NK02 468 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 CXCL11O14625 94 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 TOMM70O94826 608 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 XBP1P17861 261 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 TRIM29Q14134 588 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 SYDE2Q5VT97 1194 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 OTUD7BQ6GQQ9 843 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 FAM160B2Q86V87 743 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 GAS2L3Q86XJ1 694 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 SHISA4Q96DD7 197 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 PIGSQ96S52 555 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 GBA2Q9HCG7 927 aaPredicted RBP16.29■□□□□ 0.2
CLN3-242ENST00000635958 VAT1LQ9HCJ6 419 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 hCG_1984214I3L0E3 225 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 MBD3O95983 291 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 TPM2P07951 284 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 STAT2P52630 851 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 ZNF713Q8N859 430 aaPredicted RBP16.29■□□□□ 0.2
CLN3-242ENST00000635958 ZSCAN16Q9H4T2 348 aaPredicted RBP16.29■□□□□ 0.2
CLN3-242ENST00000635958 ELP3Q9H9T3 547 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 BARHL2Q9NY43 387 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 KCNH4Q9UQ05 1017 aa16.29■□□□□ 0.2
CLN3-242ENST00000635958 ZBTB5O15062 677 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 CELF2O95319 508 aaKnown RBP16.28■□□□□ 0.2
CLN3-242ENST00000635958 VCAM1P19320 739 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 TERF1P54274 439 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 GUCY1B3Q02153 619 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 PPIL2Q13356 520 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 CST9Q5W186 159 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 C2orf69Q8N8R5 385 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 NAP1L5Q96NT1 182 aaPredicted RBP16.28■□□□□ 0.2
CLN3-242ENST00000635958 PHF20Q9BVI0 1012 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 ZNF408Q9H9D4 720 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 LMBRD1Q9NUN5 540 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 SEC63Q9UGP8 760 aaKnown RBP16.28■□□□□ 0.2
CLN3-242ENST00000635958 PRR12Q9ULL5 1215 aa16.28■□□□□ 0.2
CLN3-242ENST00000635958 MMP1P03956 469 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 RESTQ13127 1097 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 WWC2Q6AWC2 1192 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 CNKSR2Q8WXI2 1034 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 PIBF1Q8WXW3 757 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 SLC10A4Q96EP9 437 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 VPS54Q9P1Q0 977 aa16.27■□□□□ 0.2
CLN3-242ENST00000635958 STXBP3O00186 592 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 IRF6O14896 467 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 U2AF2P26368 475 aaKnown RBP eCLIP16.26■□□□□ 0.19
CLN3-242ENST00000635958 HMGCS2P54868 508 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 FOXD4L5Q5VV16 416 aaPredicted RBP16.26■□□□□ 0.19
CLN3-242ENST00000635958 ZSCAN30Q86W11 494 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 HOMER1Q86YM7 354 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 FOXD4L4Q8WXT5 416 aaPredicted RBP16.26■□□□□ 0.19
CLN3-242ENST00000635958 TMOD4Q9NZQ9 345 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 ATP6V1DQ9Y5K8 247 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 HSPA6P17066 643 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 FOSBP53539 338 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 KIF23Q02241 960 aaPredicted RBP16.26■□□□□ 0.19
CLN3-242ENST00000635958 DGKZQ13574 1117 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 NPY5RQ15761 445 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 MCTP1Q6DN14 999 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 GALNT17Q6IS24 598 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 PRPF38AQ8NAV1 312 aaKnown RBP16.26■□□□□ 0.19
CLN3-242ENST00000635958 UBE2Q2Q8WVN8 375 aa16.26■□□□□ 0.19
CLN3-242ENST00000635958 OTUD5Q96G74 571 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms