RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CALM3P0DP25 149 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 FDX1P10109 184 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 KIF22Q14807 665 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 GPRC5AQ8NFJ5 357 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 NUP133Q8WUM0 1156 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 ZNF296Q8WUU4 475 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 ERO1AQ96HE7 468 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 PDRG1Q9NUG6 133 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 RBPJLQ9UBG7 517 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 A0A0G2JMZ2 1700 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 COL11A1P12107 1806 aaPredicted RBP22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 VWA5AO00534 786 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 GOLGA8HP0CJ92 632 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 ERVK-9P63128 1117 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 ERVK-24P63145 666 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 TROAPQ12815 778 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 GRM4Q14833 912 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 SYDE2Q5VT97 1194 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 TTBK2Q6IQ55 1244 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 BTNL9Q6UXG8 535 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 CTCFLQ8NI51 663 aaPredicted RBP22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 BRF1Q92994 677 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 MAP3K14Q99558 947 aa22.29■■□□□ 1.16
SQSTM1-216ENST00000626660 KIF5BP33176 963 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 SLC16A2P36021 539 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 RBM25P49756 843 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 CCNA1P78396 465 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 ARHGEF6Q15052 776 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 CCAR1Q8IX12 1150 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 FBXL16Q8N461 479 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 TXNRD2Q9NNW7 524 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 PRR12Q9ULL5 1215 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 NAP1L2Q9ULW6 460 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 ADAMTS5Q9UNA0 930 aa22.28■■□□□ 1.16
SQSTM1-216ENST00000626660 KLF18A0A0U1RQI7 1052 aa22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 LACTBP83111 547 aaPredicted RBP22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 PLS1Q14651 629 aa22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 APOA5Q6Q788 366 aa22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 MYL10Q9BUA6 226 aa22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 BTBD7Q9P203 1132 aa22.27■■□□□ 1.16
SQSTM1-216ENST00000626660 KLRF2D3W0D1 207 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 ZBTB43O43298 467 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 DHX16O60231 1041 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 CNMDO75829 334 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 APOBRQ0VD83 1088 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 POTEEQ6S8J3 1075 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 MICU3Q86XE3 530 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 CD99L2Q8TCZ2 262 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 AGXT2Q9BYV1 514 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 SLC38A10Q9HBR0 1119 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 CWC22Q9HCG8 908 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 MAD2L2Q9UI95 211 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 MGAMO43451 1857 aa22.26■■□□□ 1.15
SQSTM1-216ENST00000626660 PALM3A6NDB9 673 aaPredicted RBP22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 PEX10O60683 326 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 SLC34A2O95436 690 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 GNAQP50148 359 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 STAG2Q8N3U4 1231 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 UBA5Q9GZZ9 404 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 SPATC1LQ9H0A9 340 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 BRPF3Q9ULD4 1205 aa22.25■■□□□ 1.15
SQSTM1-216ENST00000626660 GOLGA8BA8MQT2 603 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 NEK4P51957 841 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 RCAN1P53805 252 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 FCGRTP55899 365 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 TMEM132BQ14DG7 1078 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 ANKRD1Q15327 319 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 Q3C1V9 767 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 RAB11FIP4Q86YS3 637 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 CPXCR1Q8N123 301 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 REPS2Q8NFH8 660 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 TBC1D32Q96NH3 1257 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 LZTS2Q9BRK4 669 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 TEX13BQ9BXU2 312 aa22.24■■□□□ 1.15
SQSTM1-216ENST00000626660 BAZ2BQ9UIF8 2168 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 MYH6P13533 1939 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 GOLGA8AA7E2F4 631 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 ECM2O94769 699 aaPredicted RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 FMNL1O95466 1100 aaPredicted RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 RXRAP19793 462 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 MAPK4P31152 587 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 COPB2P35606 906 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 STAT3P40763 770 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 PSMC4P43686 418 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 OAZ1P54368 228 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 TOB2Q14106 344 aaPredicted RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 CCDC144CPQ8IYA2 1237 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 FANCBQ8NB91 859 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 MOV10L1Q9BXT6 1211 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 ALDH8A1Q9H2A2 487 aaPredicted RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 CPVLQ9H3G5 476 aa22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 RBM28Q9NW13 759 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-216ENST00000626660 ATP2A1O14983 1001 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 SLC25A27O95847 323 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 RTN1Q16799 776 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 WDR78Q5VTH9 848 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 CCDC174Q6PII3 467 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 RIOX2Q8IUF8 465 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 ADGRF4Q8IZF3 695 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 SHCBP1Q8NEM2 672 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms