RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ARHGEF1Q92888 912 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 PARD6BQ9BYG5 372 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 NARFQ9UHQ1 456 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 CCNL1Q9UK58 526 aaPredicted RBP14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 TFR2Q9UP52 801 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 RTCBQ9Y3I0 505 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 ARAP2Q8WZ64 1704 aa14.58□□□□□ -0.08
CCDC88A-214ENST00000621814 BCORQ6W2J9 1755 aa14.58□□□□□ -0.08
CCDC88A-214ENST00000621814 TCP11X2Q5H9J9 407 aa14.58□□□□□ -0.08
CCDC88A-214ENST00000621814 CNGA4Q8IV77 575 aa14.58□□□□□ -0.08
CCDC88A-214ENST00000621814 ZCCHC17Q9NP64 241 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-214ENST00000621814 CYTH3O43739 400 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 ERCC3P19447 782 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 ZNF658Q5TYW1 1059 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 USP17L2Q6R6M4 530 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 SLC35F6Q8N357 371 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 MAD2L2Q9UI95 211 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 RWDD2AQ9UIY3 292 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 PCDHA6Q9UN73 950 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 PCDHA8Q9Y5H6 950 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 CACNA1SQ13698 1873 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 CCNT1O60563 726 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 RFC4P35249 363 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 ERVK-24P63145 666 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 SLC10A5Q5PT55 438 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 SPTY2D1Q68D10 685 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 TRIM47Q96LD4 638 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 PCMTD1Q96MG8 357 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 CHP1Q99653 195 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 DISC1Q9NRI5 854 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 MYH6P13533 1939 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 MYH13Q9UKX3 1938 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 PLA2G4AP47712 749 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 TRAPPC10P48553 1259 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 NAPAP54920 295 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 GABPB1Q06547 395 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 SLC35G1Q2M3R5 365 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 TMEM47Q9BQJ4 181 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 ABHD10Q9NUJ1 306 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 TRIM10Q9UDY6 481 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 GUCA1BQ9UMX6 200 aa14.57□□□□□ -0.08
CCDC88A-214ENST00000621814 KLRF2D3W0D1 207 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 BAG3O95817 575 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 RHOXF2BP0C7M4 288 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 EIF6P56537 245 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 GOLGA1Q92805 767 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 UIMC1Q96RL1 719 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 RHOXF2Q9BQY4 288 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 UBA5Q9GZZ9 404 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 RNF216Q9NWF9 866 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 LONP1P36776 959 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 PBX1P40424 430 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 CHMP4BP1P59074 171 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 SBK1Q52WX2 424 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 CCDC178Q5BJE1 867 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 C4orf32Q8N8J7 132 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 HPS3Q969F9 1004 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 RMND1Q9NWS8 449 aa14.56□□□□□ -0.08
CCDC88A-214ENST00000621814 PARP1P09874 1014 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 TM4SF1P30408 202 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 TECP42680 631 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 DGKHQ86XP1 1220 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 RPS6KA4O75676 772 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 SASH3O75995 380 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 JAKMIP3Q5VZ66 844 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 NAA15Q9BXJ9 866 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 COL16A1Q07092 1604 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 ROBO1Q9Y6N7 1651 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 CTAGE9A4FU28 777 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 ENC1O14682 589 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 NAALADL2Q58DX5 795 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 GPR161Q8N6U8 529 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 ARFGAP3Q9NP61 516 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 BIN2Q9UBW5 565 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 PHLPP1O60346 1717 aa14.55□□□□□ -0.08
CCDC88A-214ENST00000621814 B4DLN1 442 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 F8W031 263 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 BTDP43251 543 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 GYS2P54840 703 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 CC2D1AQ6P1N0 951 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 EYA3Q99504 573 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 MAGEC2Q9UBF1 373 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 PLCH1Q4KWH8 1693 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 TTC26A0AVF1 554 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 SMCO2A6NFE2 343 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 PICALMQ13492 652 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 TXNRD1Q16881 649 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 ARL6IP4Q66PJ3 421 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 BARGINQ6ZT62 677 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 WDR66Q8TBY9 1149 aa14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 LIMA1Q9UHB6 759 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 FRMPD2Q68DX3 1309 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-214ENST00000621814 RAD21O60216 631 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 ZRANB2O95218 330 aaKnown RBP eCLIP14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 KIF20AO95235 890 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 KLK7P49862 253 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 GRM4Q14833 912 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 CT47A1Q5JQC4 288 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 CYP26C1Q6V0L0 522 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 TMTC1Q8IUR5 882 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms