RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PPP1R11O60927 126 aaPredicted RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 FAM177A1Q8N128 213 aaPredicted RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 LEO1Q8WVC0 666 aaPredicted RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 SCAND2PQ9GZW5 306 aaPredicted RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 KRT2P35908 639 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 NOL9Q5SY16 702 aaKnown RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 HEATR3Q7Z4Q2 680 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 GPT2Q8TD30 523 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 SH2D4AQ9H788 454 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 SEC63Q9UGP8 760 aaKnown RBP16.43■□□□□ 0.22
USP39-220ENST00000613444 CFAP45Q9UL16 551 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 PARP14Q460N5 1801 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 PNMA6FA0A0J9YX94 578 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 M0R2N6 131 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 PTPRAP18433 802 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 EARS2Q5JPH6 523 aaKnown RBP16.42■□□□□ 0.22
USP39-220ENST00000613444 PNMA8AQ86V59 439 aaPredicted RBP16.42■□□□□ 0.22
USP39-220ENST00000613444 ZNF396Q96N95 335 aaPredicted RBP16.42■□□□□ 0.22
USP39-220ENST00000613444 KIAA1683Q9H0B3 1180 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 RCOR1Q9UKL0 485 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 PTPRFP10586 1907 aa16.42■□□□□ 0.22
USP39-220ENST00000613444 TMEM232C9JQI7 657 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 TOB1P50616 345 aaPredicted RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 NLRP5P59047 1200 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 ZYXQ15942 572 aaKnown RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 FAM83BQ5T0W9 1011 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 WDR18Q9BV38 432 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 ZMYND12Q9H0C1 365 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 RTEL1Q9NZ71 1219 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 ZBTB5O15062 677 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 POTEIP0CG38 1075 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 POTEJP0CG39 1038 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 GNL2Q13823 731 aaKnown RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 EAPPQ56P03 285 aaPredicted RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 NOM1Q5C9Z4 860 aaKnown RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.41■□□□□ 0.22
USP39-220ENST00000613444 DAGLBQ8NCG7 672 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 CDCA5Q96FF9 252 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 SPATA32Q96LK8 384 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 POLR3EQ9NVU0 708 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 CLIC4Q9Y696 253 aa16.41■□□□□ 0.22
USP39-220ENST00000613444 FAM205CA6NFA0 338 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 hCG_1984214I3L0E3 225 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 CALML3P27482 149 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 NASPP49321 788 aaPredicted RBP16.4■□□□□ 0.22
USP39-220ENST00000613444 CEBPZQ03701 1054 aaKnown RBP16.4■□□□□ 0.22
USP39-220ENST00000613444 CSPP1Q1MSJ5 1256 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 KLHL40Q2TBA0 621 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 ZNF713Q8N859 430 aaPredicted RBP16.4■□□□□ 0.22
USP39-220ENST00000613444 CCDC148Q8NFR7 591 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 PCDHA4Q9UN74 947 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 PLA2G6O60733 806 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 PRKG1Q13976 671 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 QRICH1Q2TAL8 776 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 SKOR2Q2VWA4 1001 aaPredicted RBP16.4■□□□□ 0.22
USP39-220ENST00000613444 SYDE2Q5VT97 1194 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 GALNT17Q6IS24 598 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 BLIDQ8IZY5 108 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 LINC00301Q8NCQ3 95 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 COA7Q96BR5 231 aa16.4■□□□□ 0.22
USP39-220ENST00000613444 ISY1Q9ULR0 285 aaKnown RBP16.4■□□□□ 0.22
USP39-220ENST00000613444 RLFQ13129 1914 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 ESYT2A0FGR8 921 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 STAT2P52630 851 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 NAPAP54920 295 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 UBE2HP62256 183 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 DGKZQ13574 1117 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 PGBD1Q96JS3 809 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 FEZ1Q99689 392 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 BRMS1Q9HCU9 246 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 PICK1Q9NRD5 415 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 EMILIN3Q9NT22 766 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 PRR12Q9ULL5 1215 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 SNCAIPQ9Y6H5 919 aa16.39■□□□□ 0.21
USP39-220ENST00000613444 DDX49Q9Y6V7 483 aaKnown RBP16.39■□□□□ 0.21
USP39-220ENST00000613444 MAP3K9P80192 1104 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 SPP2Q13103 211 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 MTMR2Q13614 643 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 CDC37Q16543 378 aaPredicted RBP16.38■□□□□ 0.21
USP39-220ENST00000613444 ANO1Q5XXA6 986 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 ZNF280CQ8ND82 737 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 LPAR1Q92633 364 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 YEATS4O95619 227 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 BACE1P56817 501 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 VGLL4Q14135 290 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 PTPAQ15257 358 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 RILPL1Q5EBL4 403 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 CCDC12Q8WUD4 166 aaPredicted RBP16.38■□□□□ 0.21
USP39-220ENST00000613444 ZHX2Q9Y6X8 837 aa16.38■□□□□ 0.21
USP39-220ENST00000613444 SMCO2A6NFE2 343 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 PPP1R12BO60237 982 aaPredicted RBP16.37■□□□□ 0.21
USP39-220ENST00000613444 PPP1R18Q6NYC8 613 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 AS3MTQ9HBK9 375 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 PCDHA6Q9UN73 950 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 PCDHA8Q9Y5H6 950 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 WNT7AO00755 349 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 WDR46O15213 610 aaKnown RBP16.37■□□□□ 0.21
USP39-220ENST00000613444 SNAP25P60880 206 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 SF3A1Q15459 793 aaKnown RBP16.37■□□□□ 0.21
USP39-220ENST00000613444 MAP3K11Q16584 847 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms