RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 LHX8Q68G74 356 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 CWC27Q6UX04 472 aaKnown RBP13.63□□□□□ -0.23
LINC00539-204ENST00000608957 RIOX2Q8IUF8 465 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 TBC1D10CQ8IV04 446 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 CHMP4CQ96CF2 233 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 DIAPH3Q9NSV4 1193 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 SYNPO2Q9UMS6 1093 aa13.63□□□□□ -0.23
LINC00539-204ENST00000608957 TSPY2A6NKD2 308 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 STRNO43815 780 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 RANBP6O60518 1105 aaKnown RBP13.62□□□□□ -0.23
LINC00539-204ENST00000608957 REC8O95072 547 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 CYP2C19P33261 490 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 STAT3P40763 770 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 PAWRQ96IZ0 340 aaKnown RBP13.62□□□□□ -0.23
LINC00539-204ENST00000608957 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 MROH8Q9H579 483 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 OGDHLQ9ULD0 1010 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 RIPK3Q9Y572 518 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 NEDD4P46934 1319 aa13.62□□□□□ -0.23
LINC00539-204ENST00000608957 MYH6P13533 1939 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 SLC25A27O95847 323 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 BMP3P12645 472 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 RRP12Q5JTH9 1297 aaKnown RBP13.61□□□□□ -0.23
LINC00539-204ENST00000608957 OLFML2BQ68BL8 750 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 ABRAQ8N0Z2 381 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 STAG1Q8WVM7 1258 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 RUFY2Q8WXA3 655 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 KIFC2Q96AC6 838 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 FEM1BQ9UK73 627 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 RAD50Q92878 1312 aa13.61□□□□□ -0.23
LINC00539-204ENST00000608957 LRRC37A2A6NM11 1700 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 SGSM2O43147 1006 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 PGK2P07205 417 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 CYBAP13498 195 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 MCCP23508 829 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 ANP32AP39687 249 aaKnown RBP13.6□□□□□ -0.23
LINC00539-204ENST00000608957 AKNAD1Q5T1N1 836 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 MFSD14CQ5VZR4 134 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 SNRNP48Q6IEG0 339 aaKnown RBP13.6□□□□□ -0.23
LINC00539-204ENST00000608957 DPP9Q86TI2 863 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 PRPF38AQ8NAV1 312 aaKnown RBP13.6□□□□□ -0.23
LINC00539-204ENST00000608957 GMCL1Q96IK5 515 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 MAML3Q96JK9 1138 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 MMP19Q99542 508 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 C22orf23Q9BZE7 217 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 SLC38A10Q9HBR0 1119 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 RAVER2Q9HCJ3 691 aaKnown RBP13.6□□□□□ -0.23
LINC00539-204ENST00000608957 STX8Q9UNK0 236 aa13.6□□□□□ -0.23
LINC00539-204ENST00000608957 TMEM232C9JQI7 657 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 H0YGN5 161 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 ATP2A1O14983 1001 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 FCER1AP12319 257 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 ZNF792Q3KQV3 632 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 PRAMEF19Q5SWL8 479 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 RCSD1Q6JBY9 416 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 KCTD1Q719H9 257 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 CPXCR1Q8N123 301 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 ANKLE1Q8NAG6 615 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 DSCC1Q9BVC3 393 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 TEX13BQ9BXU2 312 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 TOMM22Q9NS69 142 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 TCP11L1Q9NUJ3 509 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 PFASO15067 1338 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 ZNF536O15090 1300 aa13.59□□□□□ -0.23
LINC00539-204ENST00000608957 TAL1P17542 331 aaPredicted RBP13.58□□□□□ -0.24
LINC00539-204ENST00000608957 CAPN2P17655 700 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 RBM25P49756 843 aaKnown RBP13.58□□□□□ -0.24
LINC00539-204ENST00000608957 SNAP25P60880 206 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 TTBK2Q6IQ55 1244 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.58□□□□□ -0.24
LINC00539-204ENST00000608957 DPF3Q92784 378 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 FGD4Q96M96 766 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 TMEM47Q9BQJ4 181 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 MTMR7Q9Y216 660 aa13.58□□□□□ -0.24
LINC00539-204ENST00000608957 DNAJC25-GNG10A0A024R161 153 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 EPB41L2O43491 1005 aaKnown RBP13.57□□□□□ -0.24
LINC00539-204ENST00000608957 PLA2G6O60733 806 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 ZBED4O75132 1171 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 COL6A1P12109 1028 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 SLC1A4P43007 532 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 STAT2P52630 851 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 NECAB2Q7Z6G3 386 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 HTATIP2Q9BUP3 242 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 USP26Q9BXU7 913 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
LINC00539-204ENST00000608957 DDX20Q9UHI6 824 aaKnown RBP13.57□□□□□ -0.24
LINC00539-204ENST00000608957 ZNF213O14771 459 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 TOP1P11387 765 aaKnown RBP13.56□□□□□ -0.24
LINC00539-204ENST00000608957 CNGA1P29973 690 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 COPB2P35606 906 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 SLC4A3P48751 1232 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 PTH1RQ03431 593 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 PPP4R3BQ5MIZ7 849 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 ANO1Q5XXA6 986 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 MFSD6Q6ZSS7 791 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 FAM160B2Q86V87 743 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 AGBL1Q96MI9 1066 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 ZKSCAN3Q9BRR0 538 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 C11orf49Q9H6J7 331 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 PCDH10Q9P2E7 1040 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms