RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 INTS4Q96HW7 963 aaKnown RBP16.67■□□□□ 0.26
UPF1-211ENST00000600868 CAPNS2Q96L46 248 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 TANGO6Q9C0B7 1094 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 UBA5Q9GZZ9 404 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 MYPNQ86TC9 1320 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 CYTH3O43739 400 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 CTDNEP1O95476 244 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 SLC16A2P36021 539 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 NOGQ13253 232 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 COG2Q14746 738 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 SLC35G1Q2M3R5 365 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 SYDE2Q5VT97 1194 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 CMTR1Q8N1G2 835 aaKnown RBP16.66■□□□□ 0.26
UPF1-211ENST00000600868 PRPF38AQ8NAV1 312 aaKnown RBP16.66■□□□□ 0.26
UPF1-211ENST00000600868 NSUN7Q8NE18 718 aaKnown RBP16.66■□□□□ 0.26
UPF1-211ENST00000600868 MTMR8Q96EF0 704 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 SLF1Q9BQI6 1058 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 FBXO28Q9NVF7 368 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 PPP1R9AQ9ULJ8 1098 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.66■□□□□ 0.26
UPF1-211ENST00000600868 CNTNAP5Q8WYK1 1306 aa16.66■□□□□ 0.26
UPF1-211ENST00000600868 BTBD19C9JJ37 291 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 FLOT1O75955 427 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 FDX1P10109 184 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 SREBF2Q12772 1141 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 IKQ13123 557 aaPredicted RBP16.65■□□□□ 0.26
UPF1-211ENST00000600868 ADGRF4Q8IZF3 695 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 CCDC82Q8N4S0 544 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 SMARCC2Q8TAQ2 1214 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 PTPN18Q99952 460 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 RNF26Q9BY78 433 aaPredicted RBP16.65■□□□□ 0.26
UPF1-211ENST00000600868 CPVLQ9H3G5 476 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 JMJD4Q9H9V9 463 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 ZCCHC17Q9NP64 241 aaKnown RBP16.65■□□□□ 0.26
UPF1-211ENST00000600868 HOXC10Q9NYD6 342 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 PRR12Q9ULL5 1215 aa16.65■□□□□ 0.26
UPF1-211ENST00000600868 RLFQ13129 1914 aa16.64■□□□□ 0.26
UPF1-211ENST00000600868 PARP14Q460N5 1801 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 PRPF3O43395 683 aaKnown RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 FMNL1O95466 1100 aaPredicted RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 HSPA6P17066 643 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 OSBPP22059 807 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 DSG3P32926 999 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 TM4SF4P48230 202 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 IRX3P78415 501 aaPredicted RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 HMGN5P82970 282 aaKnown RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 SSRP1Q08945 709 aaKnown RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 REM2Q8IYK8 340 aaPredicted RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 TRIM22Q8IYM9 498 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 PHKBQ93100 1093 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 ASCC2Q9H1I8 757 aaPredicted RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 RBM27Q9P2N5 1060 aaKnown RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 PNMA3Q9UL41 463 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 ADAMTS5Q9UNA0 930 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 WDR33Q9C0J8 1336 aaKnown RBP16.64■□□□□ 0.25
UPF1-211ENST00000600868 STK36Q9NRP7 1315 aa16.64■□□□□ 0.25
UPF1-211ENST00000600868 PDHXO00330 501 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 KIF23Q02241 960 aaPredicted RBP16.63■□□□□ 0.25
UPF1-211ENST00000600868 LBX2Q6XYB7 198 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 FAM43AQ8N2R8 423 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 KIFC2Q96AC6 838 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 RRP36Q96EU6 259 aaKnown RBP16.63■□□□□ 0.25
UPF1-211ENST00000600868 ZIC5Q96T25 663 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 P2RX7Q99572 595 aaKnown RBP16.63■□□□□ 0.25
UPF1-211ENST00000600868 SLC26A6Q9BXS9 759 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 RANBP17Q9H2T7 1088 aaKnown RBP16.63■□□□□ 0.25
UPF1-211ENST00000600868 VAT1LQ9HCJ6 419 aa16.63■□□□□ 0.25
UPF1-211ENST00000600868 PTPDC1A2A3K4 754 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 SPDYE16A6NNV3 312 aaPredicted RBP16.62■□□□□ 0.25
UPF1-211ENST00000600868 JAK2O60674 1132 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 MAP2K2P36507 400 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 VEGFBP49765 207 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 HTRA3P83110 453 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 AKAP17AQ02040 695 aaKnown RBP16.62■□□□□ 0.25
UPF1-211ENST00000600868 GRM1Q13255 1194 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 OTUD7BQ6GQQ9 843 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 IFNL1Q8IU54 200 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 PIGSQ96S52 555 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 SLC38A10Q9HBR0 1119 aa16.62■□□□□ 0.25
UPF1-211ENST00000600868 ORC3Q9UBD5 711 aaPredicted RBP16.62■□□□□ 0.25
UPF1-211ENST00000600868 V9GY48 417 aaPredicted RBP16.62■□□□□ 0.25
UPF1-211ENST00000600868 BAZ2BQ9UIF8 2168 aaKnown RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 PNMA6FA0A0J9YX94 578 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 IGF2BP3O00425 579 aaKnown RBP eCLIP16.61■□□□□ 0.25
UPF1-211ENST00000600868 VWA5AO00534 786 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 ZBTB5O15062 677 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 AOC2O75106 756 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 ZBED4O75132 1171 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 DEXIO95424 95 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 HSP90AA1P07900 732 aaKnown RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 FDPSP14324 419 aaKnown RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 MB21D1Q8N884 522 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 GTF3C2Q8WUA4 911 aaPredicted RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 ATG4CQ96DT6 458 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 PARK7Q99497 189 aaKnown RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 SEC63Q9UGP8 760 aaKnown RBP16.61■□□□□ 0.25
UPF1-211ENST00000600868 SMC3Q9UQE7 1217 aa16.61■□□□□ 0.25
UPF1-211ENST00000600868 PPFIA3O75145 1194 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 HERVK_113P62684 666 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 PKN1Q16512 942 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms