RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 OLFML2BQ68BL8 750 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 SKAP1Q86WV1 359 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 PRPF38AQ8NAV1 312 aaKnown RBP14.39□□□□□ -0.11
LIG1-217ENST00000599165 CHMP4CQ96CF2 233 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 PAWRQ96IZ0 340 aaKnown RBP14.39□□□□□ -0.11
LIG1-217ENST00000599165 SLC38A10Q9HBR0 1119 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 CWC22Q9HCG8 908 aaKnown RBP14.39□□□□□ -0.11
LIG1-217ENST00000599165 DIAPH3Q9NSV4 1193 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 STX8Q9UNK0 236 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 ZNF536O15090 1300 aa14.39□□□□□ -0.11
LIG1-217ENST00000599165 PGK2P07205 417 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 MCCP23508 829 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 ZNF792Q3KQV3 632 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 RRP12Q5JTH9 1297 aaKnown RBP14.38□□□□□ -0.11
LIG1-217ENST00000599165 KIFC2Q96AC6 838 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 MAML3Q96JK9 1138 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 FGD4Q96M96 766 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 DSCC1Q9BVC3 393 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 TEX13BQ9BXU2 312 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 RAVER2Q9HCJ3 691 aaKnown RBP14.38□□□□□ -0.11
LIG1-217ENST00000599165 TCP11L1Q9NUJ3 509 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 FEM1BQ9UK73 627 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 TRIOBPQ9H2D6 2365 aa14.38□□□□□ -0.11
LIG1-217ENST00000599165 DNAJC25-GNG10A0A024R161 153 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 TMEM232C9JQI7 657 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 H0YGN5 161 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 HIP1O00291 1037 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 COL6A1P12109 1028 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 FCER1AP12319 257 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 SNRNP48Q6IEG0 339 aaKnown RBP14.37□□□□□ -0.11
LIG1-217ENST00000599165 KCTD1Q719H9 257 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIG1-217ENST00000599165 DPP9Q86TI2 863 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 ANKLE1Q8NAG6 615 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 TMEM47Q9BQJ4 181 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 PFASO15067 1338 aa14.37□□□□□ -0.11
LIG1-217ENST00000599165 RANBP2P49792 3224 aaKnown RBP14.36□□□□□ -0.11
LIG1-217ENST00000599165 PLA2G6O60733 806 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 TAL1P17542 331 aaPredicted RBP14.36□□□□□ -0.11
LIG1-217ENST00000599165 CAPN2P17655 700 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 CHMLP26374 656 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 SLC1A4P43007 532 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 MFAP1P55081 439 aaKnown RBP14.36□□□□□ -0.11
LIG1-217ENST00000599165 PRAMEF19Q5SWL8 479 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 MFSD14CQ5VZR4 134 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 TTBK2Q6IQ55 1244 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 CPXCR1Q8N123 301 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 MMP19Q99542 508 aa14.36□□□□□ -0.11
LIG1-217ENST00000599165 TOP1P11387 765 aaKnown RBP14.35□□□□□ -0.11
LIG1-217ENST00000599165 PCP11498 1178 aaKnown RBP14.35□□□□□ -0.11
LIG1-217ENST00000599165 STAT2P52630 851 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 SNAP25P60880 206 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 MFSD6Q6ZSS7 791 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 TOMM22Q9NS69 142 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 DDX20Q9UHI6 824 aaKnown RBP14.35□□□□□ -0.11
LIG1-217ENST00000599165 PRR12Q9ULL5 1215 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 TAF6LQ9Y6J9 622 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 LRRC37A2A6NM11 1700 aa14.35□□□□□ -0.11
LIG1-217ENST00000599165 ZNF213O14771 459 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 ZBED4O75132 1171 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 SNHG28P0DPA3 235 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 PDHBP11177 359 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 COPB2P35606 906 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 OAZ1P54368 228 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 PTH1RQ03431 593 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 KCTD2Q14681 263 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 PPP4R3BQ5MIZ7 849 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 NECAB2Q7Z6G3 386 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 FAM160B2Q86V87 743 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 AGBL1Q96MI9 1066 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 ZKSCAN3Q9BRR0 538 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 MTMR7Q9Y216 660 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 DIS3Q9Y2L1 958 aaKnown RBP14.34□□□□□ -0.11
LIG1-217ENST00000599165 RAD50Q92878 1312 aa14.34□□□□□ -0.11
LIG1-217ENST00000599165 B4E1Z4 1266 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 KDM4AO75164 1064 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 SLC16A2P36021 539 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 BTNL9Q6UXG8 535 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 DCAF4Q8WV16 495 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 DPF3Q92784 378 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 TINF2Q9BSI4 451 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 HTATIP2Q9BUP3 242 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 PRO3102Q9H379 93 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 RNF41Q9H4P4 317 aaPredicted RBP14.33□□□□□ -0.12
LIG1-217ENST00000599165 PCDH10Q9P2E7 1040 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 ASTN1O14525 1302 aa14.33□□□□□ -0.12
LIG1-217ENST00000599165 FRMPD2Q68DX3 1309 aaPredicted RBP14.33□□□□□ -0.12
LIG1-217ENST00000599165 SGSM2O43147 1006 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 SNAI1O95863 264 aaPredicted RBP14.32□□□□□ -0.12
LIG1-217ENST00000599165 ZNF865P0CJ78 1059 aaPredicted RBP14.32□□□□□ -0.12
LIG1-217ENST00000599165 ANO1Q5XXA6 986 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 CHURC1Q8WUH1 139 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 ANKS1AQ92625 1134 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 ESR2Q92731 530 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 TTC14Q96N46 770 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 RANBP17Q9H2T7 1088 aaKnown RBP14.32□□□□□ -0.12
LIG1-217ENST00000599165 C11orf49Q9H6J7 331 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 ZSWIM5Q9P217 1185 aa14.32□□□□□ -0.12
LIG1-217ENST00000599165 SEPT4O43236 478 aa14.31□□□□□ -0.12
LIG1-217ENST00000599165 CYP21A2P08686 494 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms