RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 INCENPQ9NQS7 918 aa14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 PRKAG2Q9UGJ0 569 aa14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 AGTPBP1Q9UPW5 1226 aa14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 RBM19Q9Y4C8 960 aaKnown RBP14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 TCF20Q9UGU0 1960 aaKnown RBP14.14□□□□□ -0.15
SHKBP1-213ENST00000597325 ERICH2A1L162 156 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 XRCC5P13010 732 aaKnown RBP14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 CPA1P15085 419 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 RASA1P20936 1047 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 CCND3P30281 292 aaPredicted RBP14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 ANKRD1Q15327 319 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 BADQ92934 168 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 TACC3Q9Y6A5 838 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 RLFQ13129 1914 aa14.13□□□□□ -0.15
SHKBP1-213ENST00000597325 FAM196BA6NMK8 535 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 TBC1D12O60347 775 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CYP2B6P20813 491 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 DNAJB2P25686 324 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 SHMT1P34896 483 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 ATN1P54259 1190 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 RTP1P59025 263 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 TFAP4Q01664 338 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CERKLQ49MI3 558 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CCDC178Q5BJE1 867 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 FAM47AQ5JRC9 791 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 TREML2Q5T2D2 321 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CYB5R4Q7L1T6 521 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CHST3Q7LGC8 479 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 METTL16Q86W50 562 aaKnown RBP14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 HSCBQ8IWL3 235 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 SCYL3Q8IZE3 742 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 PPM1EQ8WY54 764 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 TMEM87BQ96K49 555 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 CCDC17Q96LX7 622 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 TCEANC2Q96MN5 208 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 ZNF576Q9H609 170 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 EPHX3Q9H6B9 360 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 DNAJC18Q9H819 358 aa14.12□□□□□ -0.15
SHKBP1-213ENST00000597325 PLIN4Q96Q06 1357 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 MPHOSPH10O00566 681 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 IFIT3O14879 490 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 BMP1P13497 986 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 MCM2P49736 904 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 TMEM67Q5HYA8 995 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 PPP4R3BQ5MIZ7 849 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 Q6ZUG5 572 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 MTA3Q9BTC8 594 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 ZSWIM5Q9P217 1185 aa14.11□□□□□ -0.15
SHKBP1-213ENST00000597325 C5orf42Q9H799 3197 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 GCLCP48506 637 aaPredicted RBP14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 ANTXR2P58335 489 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 EXOSC10Q01780 885 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 BECN1Q14457 450 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 ABCB5Q2M3G0 1257 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 TATDN1Q6P1N9 297 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 NOL8Q76FK4 1167 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 USP6NLQ92738 828 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 TTC14Q96N46 770 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 ZSCAN10Q96SZ4 725 aaPredicted RBP14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 ZKSCAN3Q9BRR0 538 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 LRRC2Q9BYS8 371 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 CABP5Q9NP86 173 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 C11orf16Q9NQ32 467 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 PNMA3Q9UL41 463 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 TNKSO95271 1327 aa14.1□□□□□ -0.15
SHKBP1-213ENST00000597325 LOC285556D6RIA3 1793 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 MYO9BQ13459 2157 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 AKR1B1P15121 316 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 AK2P54819 239 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 WTAPQ15007 396 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 TMEM31Q5JXX7 168 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 NFXL1Q6ZNB6 911 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 TMEM179Q6ZVK1 233 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 NEDD1Q8NHV4 660 aa14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 ALDH8A1Q9H2A2 487 aaPredicted RBP14.09□□□□□ -0.15
SHKBP1-213ENST00000597325 DOCK1Q14185 1865 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 TRIM43BA6NCK2 446 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 CCDC69A6NI79 296 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 TRIM75PA6NK02 468 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 SH2B2O14492 632 aaPredicted RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 GDF11O95390 407 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 SLURP2P0DP57 97 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 MRE11P49959 708 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 EPHB4P54760 987 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 MAP3K10Q02779 954 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 COL9A3Q14050 684 aaPredicted RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 IFIT1BQ5T764 474 aaKnown RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 TRMT44Q8IYL2 757 aaKnown RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 BRF1Q92994 677 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 SNX21Q969T3 373 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 TRIM43Q96BQ3 446 aaPredicted RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 RNPC3Q96LT9 517 aaKnown RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 GAS2L1Q99501 681 aaPredicted RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 P2RX7Q99572 595 aaKnown RBP14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 NUDT12Q9BQG2 462 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 PDLIM7Q9NR12 457 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 PICK1Q9NRD5 415 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 TCP11L1Q9NUJ3 509 aa14.08□□□□□ -0.16
SHKBP1-213ENST00000597325 MORF4L1Q9UBU8 362 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms