RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 BTNL9Q6UXG8 535 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 RGS22Q8NE09 1264 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 RBM46Q8TBY0 533 aaKnown RBP16.94■□□□□ 0.3
VRK3-212ENST00000596814 FOXD4L4Q8WXT5 416 aaPredicted RBP16.94■□□□□ 0.3
VRK3-212ENST00000596814 OTUD5Q96G74 571 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 C12orf42Q96LP6 360 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 EMILIN3Q9NT22 766 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 LOC285556D6RIA3 1793 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 XBP1P17861 261 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 HMGCS2P54868 508 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 FBXO18Q8NFZ0 1043 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 PIGSQ96S52 555 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 JMJD4Q9H9V9 463 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 GJB4Q9NTQ9 266 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 TMOD4Q9NZQ9 345 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 PLA2G6O60733 806 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 PPIL2Q13356 520 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 OTUD7BQ6GQQ9 843 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 FAM160B2Q86V87 743 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 OPTNQ96CV9 577 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 VPS54Q9P1Q0 977 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 FEM1BQ9UK73 627 aa16.93■□□□□ 0.3
VRK3-212ENST00000596814 PARP14Q460N5 1801 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 F13A1P00488 732 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 SH3D19Q5HYK7 790 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 KRT40Q6A162 431 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 SMC1BQ8NDV3 1235 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 CHURC1Q8WUH1 139 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 MTMR8Q96EF0 704 aa16.92■□□□□ 0.3
VRK3-212ENST00000596814 IRF6O14896 467 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 CST9Q5W186 159 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 WWC2Q6AWC2 1192 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 HEATR3Q7Z4Q2 680 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 GPKOWQ92917 476 aaPredicted RBP eCLIP16.91■□□□□ 0.3
VRK3-212ENST00000596814 SLC10A4Q96EP9 437 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 TANGO6Q9C0B7 1094 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 RPAP3Q9H6T3 665 aaPredicted RBP16.91■□□□□ 0.3
VRK3-212ENST00000596814 PRR12Q9ULL5 1215 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 PASKQ96RG2 1323 aa16.91■□□□□ 0.3
VRK3-212ENST00000596814 PNMA6FA0A0J9YX94 578 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 hCG_1984214I3L0E3 225 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 CXCL11O14625 94 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 ZBTB5O15062 677 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 CDC37Q16543 378 aaPredicted RBP16.9■□□□□ 0.3
VRK3-212ENST00000596814 ZNF713Q8N859 430 aaPredicted RBP16.9■□□□□ 0.3
VRK3-212ENST00000596814 TNPO1Q92973 898 aaKnown RBP16.9■□□□□ 0.3
VRK3-212ENST00000596814 KIFC2Q96AC6 838 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 SH3GLB2Q9NR46 395 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 BARHL2Q9NY43 387 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 KCNH4Q9UQ05 1017 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 A0A0G2JLL6 359 aaPredicted RBP16.9■□□□□ 0.3
VRK3-212ENST00000596814 MMP1P03956 469 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 QRICH1Q2TAL8 776 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 MCTP1Q6DN14 999 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 PRRT2Q7Z6L0 340 aaPredicted RBP16.9■□□□□ 0.3
VRK3-212ENST00000596814 FERMT3Q86UX7 667 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 CCDC148Q8NFR7 591 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 SHISA4Q96DD7 197 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 SLF1Q9BQI6 1058 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 FBXO28Q9NVF7 368 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 KCNJ14Q9UNX9 436 aa16.9■□□□□ 0.3
VRK3-212ENST00000596814 MYH15Q9Y2K3 1946 aa16.89■□□□□ 0.3
VRK3-212ENST00000596814 STXBP3O00186 592 aa16.89■□□□□ 0.29
VRK3-212ENST00000596814 YY1P25490 414 aa16.89■□□□□ 0.29
VRK3-212ENST00000596814 RESTQ13127 1097 aa16.89■□□□□ 0.29
VRK3-212ENST00000596814 SAFBQ15424 915 aaKnown RBP eCLIP16.89■□□□□ 0.29
VRK3-212ENST00000596814 FAM177A1Q8N128 213 aaPredicted RBP16.89■□□□□ 0.29
VRK3-212ENST00000596814 CCDC12Q8WUD4 166 aaPredicted RBP16.89■□□□□ 0.29
VRK3-212ENST00000596814 PHF20Q9BVI0 1012 aa16.89■□□□□ 0.29
VRK3-212ENST00000596814 FLOT1O75955 427 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 GJA5P36382 358 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 NAPAP54920 295 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 SAMD1Q6SPF0 538 aaPredicted RBP16.88■□□□□ 0.29
VRK3-212ENST00000596814 GADL1Q6ZQY3 521 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 PROCA1Q8NCQ7 364 aaPredicted RBP16.88■□□□□ 0.29
VRK3-212ENST00000596814 WNK4Q96J92 1243 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 RANBP17Q9H2T7 1088 aaKnown RBP16.88■□□□□ 0.29
VRK3-212ENST00000596814 ZSCAN16Q9H4T2 348 aaPredicted RBP16.88■□□□□ 0.29
VRK3-212ENST00000596814 ATP6V1DQ9Y5K8 247 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 RLFQ13129 1914 aa16.88■□□□□ 0.29
VRK3-212ENST00000596814 PPP1R11O60927 126 aaPredicted RBP16.87■□□□□ 0.29
VRK3-212ENST00000596814 TOMM70O94826 608 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 HUNKP57058 714 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 NLRP5P59047 1200 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 SNAP25P60880 206 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 KIF23Q02241 960 aaPredicted RBP16.87■□□□□ 0.29
VRK3-212ENST00000596814 GNL2Q13823 731 aaKnown RBP16.87■□□□□ 0.29
VRK3-212ENST00000596814 TYW1BQ6NUM6 668 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 PPP1R18Q6NYC8 613 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 PRPF38AQ8NAV1 312 aaKnown RBP16.87■□□□□ 0.29
VRK3-212ENST00000596814 BRMS1Q9HCU9 246 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 PPP1R9AQ9ULJ8 1098 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L15C9J2P7 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L13C9JLJ4 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L11C9JVI0 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L18D6R9N7 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L22D6RA61 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L17D6RBQ6 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L19D6RCP7 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L20D6RJB6 530 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms