RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 MB21D1Q8N884 522 aa15.39■□□□□ 0.05
SCAF1-202ENST00000595242 PPP1R12CQ9BZL4 782 aa15.39■□□□□ 0.05
SCAF1-202ENST00000595242 EHD4Q9H223 541 aa15.39■□□□□ 0.05
SCAF1-202ENST00000595242 SYNRGQ9UMZ2 1314 aa15.39■□□□□ 0.05
SCAF1-202ENST00000595242 WDFY4Q6ZS81 3184 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 FAM86C2PA6NEL3 165 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 SEC24BO95487 1268 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 PGK2P07205 417 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 GUCY1A2P33402 732 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 CDK7P50613 346 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 MTX1Q13505 466 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 POLA2Q14181 598 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 PLEKHM2Q8IWE5 1019 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 KLHDC9Q8NEP7 349 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 SSH3Q8TE77 659 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 SNX27Q96L92 541 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 GLT1D1Q96MS3 346 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 MTIF3Q9H2K0 278 aaKnown RBP15.38■□□□□ 0.05
SCAF1-202ENST00000595242 IL23AQ9NPF7 189 aa15.38■□□□□ 0.05
SCAF1-202ENST00000595242 A0A1W2PRG0 241 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 SRGAP3O43295 1099 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 FGBP02675 491 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 DSG3P32926 999 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 USP5P45974 858 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 SEPT2Q15019 361 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 PPP2R2DQ66LE6 453 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 CCSAPQ6IQ19 270 aaPredicted RBP15.37■□□□□ 0.05
SCAF1-202ENST00000595242 KHSRPQ92945 711 aaKnown RBP eCLIP15.37■□□□□ 0.05
SCAF1-202ENST00000595242 TBC1D32Q96NH3 1257 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 MMP19Q99542 508 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
SCAF1-202ENST00000595242 NAV1Q8NEY1 1877 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 ELP1O95163 1332 aa15.37■□□□□ 0.05
SCAF1-202ENST00000595242 TLL1O43897 1013 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 FLOT1O75955 427 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 CYP2C18P33260 490 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 SHMT1P34896 483 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 RABGGTBP53611 331 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 OTOP2Q7RTS6 562 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 TTC6Q86TZ1 520 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 VTI1AQ96AJ9 217 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 OSBPL3Q9H4L5 887 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 UPF2Q9HAU5 1272 aaKnown RBP15.36■□□□□ 0.05
SCAF1-202ENST00000595242 CNPY2Q9Y2B0 182 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 DIS3Q9Y2L1 958 aaKnown RBP15.36■□□□□ 0.05
SCAF1-202ENST00000595242 SALL3Q9BXA9 1300 aa15.36■□□□□ 0.05
SCAF1-202ENST00000595242 PNMA6EA0A0J9YXQ4 647 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 MYADML2A6NDP7 307 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 SLC25A27O95847 323 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 CYP2E1P05181 493 aaPredicted RBP15.35■□□□□ 0.05
SCAF1-202ENST00000595242 MYOGP15173 224 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 KCTD2Q14681 263 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 ZNF792Q3KQV3 632 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 TTC22Q5TAA0 569 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 FAM126BQ8IXS8 530 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 ATG4CQ96DT6 458 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 COG5Q9UP83 839 aa15.35■□□□□ 0.05
SCAF1-202ENST00000595242 SMIM22K7EJ46 135 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 ARVCFO00192 962 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 TLR3O15455 904 aaKnown RBP15.34■□□□□ 0.05
SCAF1-202ENST00000595242 ASGR1P07306 291 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 POU3F3P20264 500 aaPredicted RBP15.34■□□□□ 0.05
SCAF1-202ENST00000595242 CYP7A1P22680 504 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 TMEM132BQ14DG7 1078 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 KIAA1755Q5JYT7 1200 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 TTC39AQ5SRH9 613 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 SAMD1Q6SPF0 538 aaPredicted RBP15.34■□□□□ 0.05
SCAF1-202ENST00000595242 MIGA1Q8NAN2 632 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 PCSK9Q8NBP7 692 aaKnown RBP15.34■□□□□ 0.05
SCAF1-202ENST00000595242 FAM184BQ9ULE4 1060 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 PCDHA11Q9Y5I1 949 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 MTCH2Q9Y6C9 303 aa15.34■□□□□ 0.05
SCAF1-202ENST00000595242 SCN5AQ14524 2016 aa15.33■□□□□ 0.04
SCAF1-202ENST00000595242 A0A0U1RQG5 324 aaPredicted RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 PI4K2BG5E9Z4 385 aa15.33■□□□□ 0.04
SCAF1-202ENST00000595242 RFXAPO00287 272 aa15.33■□□□□ 0.04
SCAF1-202ENST00000595242 MPHOSPH10O00566 681 aaKnown RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 GTPBP6O43824 516 aaPredicted RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 EIF5BO60841 1220 aaKnown RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 CST5P28325 142 aaPredicted RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 MRE11P49959 708 aa15.33■□□□□ 0.04
SCAF1-202ENST00000595242 PLCD1P51178 756 aa15.33■□□□□ 0.04
SCAF1-202ENST00000595242 IRX5P78411 483 aaPredicted RBP15.33■□□□□ 0.04
SCAF1-202ENST00000595242 IGSF3O75054 1194 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 RAB11FIP3O75154 756 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 DUSP11O75319 330 aaKnown RBP15.32■□□□□ 0.04
SCAF1-202ENST00000595242 CD4P01730 458 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 C6orf222P0C671 652 aaPredicted RBP15.32■□□□□ 0.04
SCAF1-202ENST00000595242 GSPT1P15170 499 aaKnown RBP15.32■□□□□ 0.04
SCAF1-202ENST00000595242 CCDC158Q5M9N0 1113 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 SPICE1Q8N0Z3 855 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 ANP32EQ9BTT0 268 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 LRRCC1Q9C099 1032 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 PIH1D3Q9NQM4 214 aaKnown RBP15.32■□□□□ 0.04
SCAF1-202ENST00000595242 SLC4A7Q9Y6M7 1214 aa15.32■□□□□ 0.04
SCAF1-202ENST00000595242 CDC45O75419 566 aa15.31■□□□□ 0.04
SCAF1-202ENST00000595242 SNAI1O95863 264 aaPredicted RBP15.31■□□□□ 0.04
SCAF1-202ENST00000595242 G3BP1Q13283 466 aaKnown RBP eCLIP15.31■□□□□ 0.04
SCAF1-202ENST00000595242 CERS3Q8IU89 383 aa15.31■□□□□ 0.04
SCAF1-202ENST00000595242 RIOX2Q8IUF8 465 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms