RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 HOXC6P09630 235 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 PRKAR2AP13861 404 aaKnown RBP17.86■□□□□ 0.45
TRIM28-205ENST00000595028 NOVP48745 357 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 CCL14Q16627 93 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 RRP12Q5JTH9 1297 aaKnown RBP17.86■□□□□ 0.45
TRIM28-205ENST00000595028 AKNAD1Q5T1N1 836 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 SLFN13Q68D06 897 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 NCAPG2Q86XI2 1143 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 DEFB118Q96PH6 123 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 ZNF214Q9UL59 606 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-205ENST00000595028 ZNFX1Q9P2E3 1918 aaKnown RBP17.86■□□□□ 0.45
TRIM28-205ENST00000595028 SLC25A27O95847 323 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 NEDD4P46934 1319 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 RIOX2Q8IUF8 465 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 RPTORQ8N122 1335 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 GMCL1Q96IK5 515 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 GDF15Q99988 308 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 RNF41Q9H4P4 317 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-205ENST00000595028 PLXNA1Q9UIW2 1896 aa17.85■□□□□ 0.45
TRIM28-205ENST00000595028 LAMA2P24043 3122 aaKnown RBP17.85■□□□□ 0.45
TRIM28-205ENST00000595028 STRNO43815 780 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 BMP3P12645 472 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 ADORA2AP29274 412 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 BMP8BP34820 402 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 COPB2P35606 906 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 MFSD6Q6ZSS7 791 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 CENPQQ7L2Z9 268 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-205ENST00000595028 ABRAQ8N0Z2 381 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 PRPF38AQ8NAV1 312 aaKnown RBP17.84■□□□□ 0.45
TRIM28-205ENST00000595028 TEX13BQ9BXU2 312 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 HMX1Q9NP08 348 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-205ENST00000595028 TCP11L1Q9NUJ3 509 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 MTMR10Q9NXD2 777 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 FEM1BQ9UK73 627 aa17.84■□□□□ 0.45
TRIM28-205ENST00000595028 ZNF213O14771 459 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 CHMLP26374 656 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 STAT3P40763 770 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 SLC1A4P43007 532 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 NPLOC4Q8TAT6 608 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 CRISPLD2Q9H0B8 497 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 FLRT1Q9NZU1 646 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 EYSQ5T1H1 3165 aa17.83■□□□□ 0.44
TRIM28-205ENST00000595028 TFRCP02786 760 aaKnown RBP17.82■□□□□ 0.44
TRIM28-205ENST00000595028 CAPN2P17655 700 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 NT5C2P49902 561 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 STAT2P52630 851 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 CACNB2Q08289 660 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-205ENST00000595028 SNRNP48Q6IEG0 339 aaKnown RBP17.82■□□□□ 0.44
TRIM28-205ENST00000595028 RASGRP2Q7LDG7 609 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 RUFY2Q8WXA3 655 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 KIFC2Q96AC6 838 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 SLC38A10Q9HBR0 1119 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 CTNNA3Q9UI47 895 aa17.82■□□□□ 0.44
TRIM28-205ENST00000595028 ISY1Q9ULR0 285 aaKnown RBP17.82■□□□□ 0.44
TRIM28-205ENST00000595028 TMEM232C9JQI7 657 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 ATP2A1O14983 1001 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 COBLO75128 1261 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 ZBED4O75132 1171 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 IGHA2P01877 340 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 TOP1P11387 765 aaKnown RBP17.81■□□□□ 0.44
TRIM28-205ENST00000595028 FCER1AP12319 257 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 MCCP23508 829 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 IMMTQ16891 758 aaKnown RBP17.81■□□□□ 0.44
TRIM28-205ENST00000595028 MFSD14CQ5VZR4 134 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 OLFML2BQ68BL8 750 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 DPP9Q86TI2 863 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 ESR2Q92731 530 aa17.81■□□□□ 0.44
TRIM28-205ENST00000595028 PLA2G6O60733 806 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 OAZ1P54368 228 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 KCTD2Q14681 263 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 LRIT3Q3SXY7 679 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 KCTD1Q719H9 257 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 FAM160B2Q86V87 743 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.8■□□□□ 0.449e-7■□□□□ 11.1
TRIM28-205ENST00000595028 DCAF4Q8WV16 495 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 PAWRQ96IZ0 340 aaKnown RBP17.8■□□□□ 0.44
TRIM28-205ENST00000595028 MMP19Q99542 508 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 TMEM47Q9BQJ4 181 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 SLC5A4Q9NY91 659 aa17.8■□□□□ 0.44
TRIM28-205ENST00000595028 CTDP1Q9Y5B0 961 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-205ENST00000595028 SGSM2O43147 1006 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 FDX1P10109 184 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 CCND3P30281 292 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-205ENST00000595028 CCDC96Q2M329 555 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 RCSD1Q6JBY9 416 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 C7orf61Q8IZ16 206 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 CPXCR1Q8N123 301 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 CHURC1Q8WUH1 139 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 CHMP4CQ96CF2 233 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 ZMYND8Q9ULU4 1186 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-205ENST00000595028 MTMR7Q9Y216 660 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 RIPK3Q9Y572 518 aa17.79■□□□□ 0.44
TRIM28-205ENST00000595028 KDM4AO75164 1064 aa17.78■□□□□ 0.44
TRIM28-205ENST00000595028 CYP2C19P33261 490 aa17.78■□□□□ 0.44
TRIM28-205ENST00000595028 IKQ13123 557 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-205ENST00000595028 ANKLE1Q8NAG6 615 aa17.78■□□□□ 0.44
TRIM28-205ENST00000595028 DIS3LQ8TF46 1054 aaKnown RBP17.78■□□□□ 0.44
TRIM28-205ENST00000595028 TTC14Q96N46 770 aa17.78■□□□□ 0.44
TRIM28-205ENST00000595028 RAVER2Q9HCJ3 691 aaKnown RBP17.78■□□□□ 0.44
TRIM28-205ENST00000595028 OGDHLQ9ULD0 1010 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms