RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 LENG1Q96BZ8 264 aaPredicted RBP14.89□□□□□ -0.03
UPF1-203ENST00000594504 CHMP4CQ96CF2 233 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 SLF1Q9BQI6 1058 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 TINF2Q9BSI4 451 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 PRDM5Q9NQX1 630 aaPredicted RBP14.89□□□□□ -0.03
UPF1-203ENST00000594504 MTMR10Q9NXD2 777 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 PRKAG2Q9UGJ0 569 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 MYH4Q9Y623 1939 aa14.88□□□□□ -0.03
UPF1-203ENST00000594504 ZNF865P0CJ78 1059 aaPredicted RBP14.88□□□□□ -0.03
UPF1-203ENST00000594504 SNRNP48Q6IEG0 339 aaKnown RBP14.88□□□□□ -0.03
UPF1-203ENST00000594504 GPR153Q6NV75 609 aa14.88□□□□□ -0.03
UPF1-203ENST00000594504 RAVER2Q9HCJ3 691 aaKnown RBP14.88□□□□□ -0.03
UPF1-203ENST00000594504 TRIM43BA6NCK2 446 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 ZFYP08048 801 aaPredicted RBP14.87□□□□□ -0.03
UPF1-203ENST00000594504 LRRC47Q8N1G4 583 aaKnown RBP14.87□□□□□ -0.03
UPF1-203ENST00000594504 PRPF38AQ8NAV1 312 aaKnown RBP14.87□□□□□ -0.03
UPF1-203ENST00000594504 BADQ92934 168 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 KIFC2Q96AC6 838 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 TRIM43Q96BQ3 446 aaPredicted RBP14.87□□□□□ -0.03
UPF1-203ENST00000594504 CEP95Q96GE4 821 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 XPNPEP3Q9NQH7 507 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 INCENPQ9NQS7 918 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 DIS3Q9Y2L1 958 aaKnown RBP14.87□□□□□ -0.03
UPF1-203ENST00000594504 LTBP2Q14767 1821 aa14.87□□□□□ -0.03
UPF1-203ENST00000594504 ROBO3Q96MS0 1386 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 SNAI1O95863 264 aaPredicted RBP14.86□□□□□ -0.03
UPF1-203ENST00000594504 RARBP10826 455 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 GNAT2P19087 354 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 IRX5P78411 483 aaPredicted RBP14.86□□□□□ -0.03
UPF1-203ENST00000594504 SNX17Q15036 470 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 SHHQ15465 462 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 LRRFIP1Q32MZ4 808 aaKnown RBP14.86□□□□□ -0.03
UPF1-203ENST00000594504 C9orf50Q5SZB4 431 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 CCDC129Q6ZRS4 1044 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 MKL1Q969V6 931 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 DDX11Q96FC9 970 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 FAM161BQ96MY7 647 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 PDLIM7Q9NR12 457 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 MTMR4Q9NYA4 1195 aa14.86□□□□□ -0.03
UPF1-203ENST00000594504 POTEB2H3BUK9 544 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 DLL1O00548 723 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 ZBED4O75132 1171 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 ITGB8P26012 769 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 TFAP4Q01664 338 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 TLE2Q04725 743 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 SLFN13Q68D06 897 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 PLEKHM2Q8IWE5 1019 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 FSD1Q9BTV5 496 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 TEX13BQ9BXU2 312 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 OSBPL3Q9H4L5 887 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 NRBP1Q9UHY1 535 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 PHF24Q9UPV7 400 aa14.85□□□□□ -0.03
UPF1-203ENST00000594504 CTDP1Q9Y5B0 961 aaPredicted RBP14.85□□□□□ -0.03
UPF1-203ENST00000594504 TSPY3P0CV98 308 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 TSPY8P0CW00 308 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 AKR1A1P14550 325 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 COPB2P35606 906 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 CTDSPL2Q05D32 466 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 PPARAQ07869 468 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 ZMYM1Q5SVZ6 1142 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 RNF180Q86T96 592 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 NEDD1Q8NHV4 660 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 EVI5LQ96CN4 794 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 FEM1BQ9UK73 627 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 ZHX1Q9UKY1 873 aaPredicted RBP14.84□□□□□ -0.03
UPF1-203ENST00000594504 CNPY2Q9Y2B0 182 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 TACC3Q9Y6A5 838 aa14.84□□□□□ -0.03
UPF1-203ENST00000594504 DNAJC25-GNG10A0A024R161 153 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 A0A1W2PQ45 241 aaPredicted RBP14.83□□□□□ -0.04
UPF1-203ENST00000594504 A0A1W2PQY0 241 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 MYADML2A6NDP7 307 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 TMEM232C9JQI7 657 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 ATP2A1O14983 1001 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 ADAMTS4O75173 837 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 TTLL1O95922 423 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 C1orf53Q5VUE5 145 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 FGD4Q96M96 766 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 NACAP1Q9BZK3 213 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 NAPBQ9H115 298 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 SLC38A10Q9HBR0 1119 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 ISY1Q9ULR0 285 aaKnown RBP14.83□□□□□ -0.04
UPF1-203ENST00000594504 STXBP5LQ9Y2K9 1186 aa14.83□□□□□ -0.04
UPF1-203ENST00000594504 RANBP2P49792 3224 aaKnown RBP14.83□□□□□ -0.04
UPF1-203ENST00000594504 FOXP2O15409 715 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 ADCY6O43306 1168 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 BMP3P12645 472 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 MCCP23508 829 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 SNAP25P60880 206 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 PDE4BQ07343 736 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 MAMDC4Q6UXC1 1216 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 CENPQQ7L2Z9 268 aaPredicted RBP14.82□□□□□ -0.04
UPF1-203ENST00000594504 ANKRD35Q8N283 1001 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 GMCL1P1Q8NEA9 526 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 GUCD1Q96NT3 240 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 ZNF287Q9HBT7 754 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 HOMER2Q9NSB8 354 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 FAM184BQ9ULE4 1060 aa14.82□□□□□ -0.04
UPF1-203ENST00000594504 NMT2O60551 498 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 PQBP1O60828 265 aaKnown RBP14.81□□□□□ -0.04
UPF1-203ENST00000594504 CLTBP09497 229 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms