RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 ABCA3Q99758 1704 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 LRRIQ3A6PVS8 624 aaPredicted RBP16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 PRCPP42785 496 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 USP14P54578 494 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 HSP90B2PQ58FF3 399 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 CCDC148Q8NFR7 591 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 BAZ2AQ9UIF9 1905 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 TTC26A0AVF1 554 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 TRHP20396 242 aaPredicted RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 IGHMBP2P38935 993 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 SRBD1Q8N5C6 995 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 MB21D1Q8N884 522 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 ZNF804BA4D1E1 1349 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 PARP1P09874 1014 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 LONP1P36776 959 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 PSEN1P49768 467 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 PAPD7Q5XG87 772 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 ZNF507Q8TCN5 953 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 LCMT1Q9UIC8 334 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 GUCA1BQ9UMX6 200 aa16.71■□□□□ 0.27
SMARCA4-219ENST00000592604 CACNA1SQ13698 1873 aa16.71■□□□□ 0.26
SMARCA4-219ENST00000592604 MCM3P25205 808 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 AARSP49588 968 aaKnown RBP eCLIP16.7■□□□□ 0.263e-6■□□□□ 9.5
SMARCA4-219ENST00000592604 CCDC152Q4G0S7 254 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 PIK3AP1Q6ZUJ8 805 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 ADSSL1Q8N142 457 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 C4orf32Q8N8J7 132 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 CAPN11Q9UMQ6 739 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 GDAQ9Y2T3 454 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 LUC7L2Q9Y383 392 aaKnown RBP16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 LGALS16A8MUM7 142 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 SCG2P13521 617 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 CHRNDQ07001 517 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 CCDC102AQ96A19 550 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 RASSF4Q9H2L5 321 aa16.7■□□□□ 0.26
SMARCA4-219ENST00000592604 EEF1GP26641 437 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 RPGRIP1Q96KN7 1286 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 TRIM10Q9UDY6 481 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 RRP15Q9Y3B9 282 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 MCM7P33993 719 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 NLRP5P59047 1200 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 HERVK_113P62684 666 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 WDR59Q6PJI9 974 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 CTCFLQ8NI51 663 aaPredicted RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 ABCF2Q9UG63 623 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 SAR1BQ9Y6B6 198 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 CICQ96RK0 1608 aaPredicted RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 CYP2D7A0A087X1C5 515 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 TARSL2A2RTX5 802 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 SEMA3FQ13275 785 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 PFKFB3Q16875 520 aaPredicted RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 THAP9Q9H5L6 903 aa16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 MKRN1Q9UHC7 482 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 BAZ2BQ9UIF8 2168 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-219ENST00000592604 EIF5P55010 431 aaKnown RBP16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 KCNB1Q14721 858 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 MEA1Q16626 185 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 PDS5AQ29RF7 1337 aaKnown RBP16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 ORC4O43929 436 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 KRT83P78385 493 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 MAP9Q49MG5 647 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 CTR9Q6PD62 1173 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 FAM43BQ6ZT52 329 aaPredicted RBP16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 MMS19Q96T76 1030 aa16.68■□□□□ 0.26
SMARCA4-219ENST00000592604 SYF2O95926 243 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 XIRP1Q702N8 1843 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 EHBP1Q8NDI1 1231 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 KAT6BQ8WYB5 2073 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 GNL3LQ9NVN8 582 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 HDAC6Q9UBN7 1215 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 MAPK8IP1Q9UQF2 711 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 TRIM49BA6NDI0 452 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 ATP1A1P05023 1023 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 MYL1P05976 194 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 STAT6P42226 847 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 DYNLL1P63167 89 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 TSR1Q2NL82 804 aaKnown RBP16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 PARP10Q53GL7 1025 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 CCDC122Q5T0U0 273 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 TRIM34Q9BYJ4 488 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 DISC1Q9NRI5 854 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 RREB1Q92766 1687 aa16.67■□□□□ 0.26
SMARCA4-219ENST00000592604 ENC1O14682 589 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 TRIM66O15016 1216 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 ADAMTS3O15072 1205 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 PRPF6O94906 941 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 DNM2P50570 870 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 NAALADL2Q58DX5 795 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 CALML3P27482 149 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 PMS1P54277 932 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 CKAP4Q07065 602 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 C10orf67Q8IYJ2 551 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 NOC3LQ8WTT2 800 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 TTYH3Q9C0H2 523 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 FAM204AQ9H8W3 233 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 ZC3H4Q9UPT8 1303 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 KLRC4O43908 158 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 PHACTR2O75167 634 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 SRGNP10124 158 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms