RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 M0R2C6 588 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 GPAA1O43292 621 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 SNAI1O95863 264 aaPredicted RBP14.05□□□□□ -0.16
CLIP3-204ENST00000590559 NDUFB10O96000 172 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 ZFYP08048 801 aaPredicted RBP14.05□□□□□ -0.16
CLIP3-204ENST00000590559 RARBP10826 455 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 TSHZ3Q63HK5 1081 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 CCSAPQ6IQ19 270 aaPredicted RBP14.05□□□□□ -0.16
CLIP3-204ENST00000590559 SAMD1Q6SPF0 538 aaPredicted RBP14.05□□□□□ -0.16
CLIP3-204ENST00000590559 PRPF38AQ8NAV1 312 aaKnown RBP14.05□□□□□ -0.16
CLIP3-204ENST00000590559 BADQ92934 168 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 FERMT2Q96AC1 680 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 TEX13BQ9BXU2 312 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 XPNPEP3Q9NQH7 507 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 PRKAG2Q9UGJ0 569 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 SYNPO2Q9UMS6 1093 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 SYNGAP1Q96PV0 1343 aa14.05□□□□□ -0.16
CLIP3-204ENST00000590559 CHD7Q9P2D1 2997 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 A0A1W2PQ45 241 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-204ENST00000590559 A0A1W2PQY0 241 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 PGK1P00558 417 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 AKR1A1P14550 325 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 TLE2Q04725 743 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 ZNF467Q7Z7K2 595 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-204ENST00000590559 KLHDC9Q8NEP7 349 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 FGD4Q96M96 766 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 TSEN34Q9BSV6 310 aaKnown RBP14.04□□□□□ -0.16
CLIP3-204ENST00000590559 MKNK2Q9HBH9 465 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 SLC38A10Q9HBR0 1119 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 MTMR4Q9NYA4 1195 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 LRRC37A2A6NM11 1700 aa14.04□□□□□ -0.16
CLIP3-204ENST00000590559 LCTP09848 1927 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 MINDY4BA8MYZ0 360 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 PATL2C9JE40 543 aaKnown RBP14.03□□□□□ -0.16
CLIP3-204ENST00000590559 KIAA0355O15063 1070 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 GNAT2P19087 354 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 SNRNP48Q6IEG0 339 aaKnown RBP14.03□□□□□ -0.16
CLIP3-204ENST00000590559 ANKRD33Q7Z3H0 272 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 RNF180Q86T96 592 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 IFNL3Q8IZI9 196 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 GMCL1P1Q8NEA9 526 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 PI4K2BQ8TCG2 481 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 LENG1Q96BZ8 264 aaPredicted RBP14.03□□□□□ -0.16
CLIP3-204ENST00000590559 CEP95Q96GE4 821 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 CLIP2Q9UDT6 1046 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 TACC3Q9Y6A5 838 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 SYNRGQ9UMZ2 1314 aa14.03□□□□□ -0.16
CLIP3-204ENST00000590559 TTC41PQ6P2S7 1318 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 SALL3Q9BXA9 1300 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 FOXP2O15409 715 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 ADCY6O43306 1168 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 OAZ1P54368 228 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 STK11IPQ8N1F8 1099 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 TOX2Q96NM4 488 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 SEC62Q99442 399 aaKnown RBP14.02□□□□□ -0.17
CLIP3-204ENST00000590559 KATNBL1Q9H079 304 aa14.02□□□□□ -0.17
CLIP3-204ENST00000590559 PRDM5Q9NQX1 630 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-204ENST00000590559 RAD21O60216 631 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 DUSP11O75319 330 aaKnown RBP14.01□□□□□ -0.17
CLIP3-204ENST00000590559 PRDM1O75626 825 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 TTLL1O95922 423 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 MYCNP04198 464 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-204ENST00000590559 CLTBP09497 229 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 CST5P28325 142 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-204ENST00000590559 EPHB4P54760 987 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 NKX3-2P78367 333 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 SMAD3P84022 425 aaKnown RBP14.01□□□□□ -0.17
CLIP3-204ENST00000590559 FAAP100Q0VG06 881 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 ZNF444Q8N0Y2 327 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-204ENST00000590559 NEDD1Q8NHV4 660 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 GPATCH3Q96I76 525 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 FEM1BQ9UK73 627 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 CNPY2Q9Y2B0 182 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 PCDHB15Q9Y5E8 787 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 TRANK1O15050 2925 aa14.01□□□□□ -0.17
CLIP3-204ENST00000590559 MYADML2A6NDP7 307 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 MOXD2PA6NHM9 499 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ZBED4O75132 1171 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 TDO2P48775 406 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 CDK7P50613 346 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ACLYP53396 1101 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ZMYM1Q5SVZ6 1142 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ZNF697Q5TEC3 545 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 CHST13Q8NET6 341 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 OTUD7AQ8TE49 926 aaPredicted RBP14□□□□□ -0.17
CLIP3-204ENST00000590559 UPF3AQ9H1J1 476 aaKnown RBP14□□□□□ -0.17
CLIP3-204ENST00000590559 TTYH1Q9H313 450 aaPredicted RBP14□□□□□ -0.17
CLIP3-204ENST00000590559 SEMA6BQ9H3T3 888 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ZNF287Q9HBT7 754 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 RAVER2Q9HCJ3 691 aaKnown RBP14□□□□□ -0.17
CLIP3-204ENST00000590559 FAM184BQ9ULE4 1060 aa14□□□□□ -0.17
CLIP3-204ENST00000590559 ZNF536O15090 1300 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 CTAGE5O15320 804 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 PLA2G6O60733 806 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 FDX1P10109 184 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 NOVP48745 357 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 IRX5P78411 483 aaPredicted RBP13.99□□□□□ -0.17
CLIP3-204ENST00000590559 ACVR2BQ13705 512 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 KCNA10Q16322 511 aa13.99□□□□□ -0.17
CLIP3-204ENST00000590559 CPXCR1Q8N123 301 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms