RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PPP2R5BQ15173 497 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 POTEEQ6S8J3 1075 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 GADL1Q6ZQY3 521 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 IFNL1Q8IU54 200 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 SPICE1Q8N0Z3 855 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 PNMA1Q8ND90 353 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 NUP133Q8WUM0 1156 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 PHKBQ93100 1093 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 MKL1Q969V6 931 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 MAP3K14Q99558 947 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 AS3MTQ9HBK9 375 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 CPLX1O14810 134 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 FMNL1O95466 1100 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 TTLL1O95922 423 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 F13A1P00488 732 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 CALM1P0DP23 149 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 CALM2P0DP24 149 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 CALM3P0DP25 149 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 SLC35G1Q2M3R5 365 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 CMTR1Q8N1G2 835 aaKnown RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 JMYQ8N9B5 988 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 NUP88Q99567 741 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 STX8Q9UNK0 236 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 RLFQ13129 1914 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 STK36Q9NRP7 1315 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 PLEKHA8P1O95397 391 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 TOP1P11387 765 aaKnown RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 PDIA4P13667 645 aaKnown RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 VCAM1P19320 739 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 GRM4Q14833 912 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 USP17L2Q6R6M4 530 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 TMTC3Q6ZXV5 915 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 SRBD1Q8N5C6 995 aaKnown RBP12.13□□□□□ -0.47
VPS4B-204ENST00000589604 C12orf42Q96LP6 360 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 AIFM3Q96NN9 605 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 FEZ1Q99689 392 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 VCPKMTQ9H867 229 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 KAT14Q9H8E8 782 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 ARHGEF10LQ9HCE6 1279 aa12.13□□□□□ -0.47
VPS4B-204ENST00000589604 CCDC196A0A1B0GTZ2 297 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 VPS37CA5D8V6 355 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-204ENST00000589604 C19orf81C9J6K1 198 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 F5H6K3 240 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 CDKL5O76039 1030 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 NDUFB10O96000 172 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 KLRC3Q07444 240 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 STAG2Q8N3U4 1231 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 FAM184AQ8NB25 1140 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 PROCA1Q8NCQ7 364 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-204ENST00000589604 RGS22Q8NE09 1264 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 GJB4Q9NTQ9 266 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 RBM28Q9NW13 759 aaKnown RBP12.12□□□□□ -0.47
VPS4B-204ENST00000589604 RNF186Q9NXI6 227 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 MAD2L2Q9UI95 211 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 AGTPBP1Q9UPW5 1226 aa12.12□□□□□ -0.47
VPS4B-204ENST00000589604 PARP14Q460N5 1801 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 PALM3A6NDB9 673 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-204ENST00000589604 PDHXO00330 501 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 PEX10O60683 326 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 CYP2C8P10632 490 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 SSRP1Q08945 709 aaKnown RBP12.11□□□□□ -0.47
VPS4B-204ENST00000589604 SREBF2Q12772 1141 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 RESTQ13127 1097 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 PKN1Q16512 942 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 OTUD7BQ6GQQ9 843 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 CPLX2Q6PUV4 134 aaKnown RBP12.11□□□□□ -0.47
VPS4B-204ENST00000589604 ANKRD23Q86SG2 305 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 FBXO18Q8NFZ0 1043 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 SHISA4Q96DD7 197 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 SLC26A6Q9BXS9 759 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 WBP1LQ9NX94 342 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 TSKSQ9UJT2 592 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 CNTNAP5Q8WYK1 1306 aa12.11□□□□□ -0.47
VPS4B-204ENST00000589604 PRPF3O43395 683 aaKnown RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 SNHG28P0DPA3 235 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 FOSBP53539 338 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 INHBEP58166 350 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 FAM83BQ5T0W9 1011 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 FASTKD5Q7L8L6 764 aaKnown RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 CCDC82Q8N4S0 544 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 RNF26Q9BY78 433 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 RPAP3Q9H6T3 665 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 FBXO28Q9NVF7 368 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 MTMR7Q9Y216 660 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 ADGRA2Q96PE1 1338 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 RIOK3O14730 519 aaKnown RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 RAD21O60216 631 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 TRPA1O75762 1119 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 TBC1D8O95759 1140 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 USP14P54578 494 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 GUCY1B3Q02153 619 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 CRHR2Q13324 411 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 FERMT3Q86UX7 667 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 GMCL1P1Q8NEA9 526 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 CTCFLQ8NI51 663 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 GBP4Q96PP9 640 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 P2RX7Q99572 595 aaKnown RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 ALG1Q9BT22 464 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 ASCC2Q9H1I8 757 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-204ENST00000589604 TMOD4Q9NZQ9 345 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms