RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 ELP1O95163 1332 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 MROH7Q68CQ1 1323 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 SYNGAP1Q96PV0 1343 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 DUSP11O75319 330 aaKnown RBP11.94□□□□□ -0.5
RFFL-208ENST00000581039 SNAI1O95863 264 aaPredicted RBP11.94□□□□□ -0.5
RFFL-208ENST00000581039 COL9A1P20849 921 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 SLC4A3P48751 1232 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 CCSAPQ6IQ19 270 aaPredicted RBP11.94□□□□□ -0.5
RFFL-208ENST00000581039 MAMDC4Q6UXC1 1216 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 C16orf86Q6ZW13 317 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 TMEM199Q8N511 208 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 REPS2Q8NFH8 660 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 KIF1BPQ96EK5 621 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 SLF1Q9BQI6 1058 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 TEX13BQ9BXU2 312 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 SPC25Q9HBM1 224 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 PAG1Q9NWQ8 432 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 TBX21Q9UL17 535 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 CTDP1Q9Y5B0 961 aaPredicted RBP11.94□□□□□ -0.5
RFFL-208ENST00000581039 A0A0G2JMZ2 1700 aa11.94□□□□□ -0.5
RFFL-208ENST00000581039 SMIM22K7EJ46 135 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 C6orf222P0C671 652 aaPredicted RBP11.93□□□□□ -0.5
RFFL-208ENST00000581039 ADD2P35612 726 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 CDK7P50613 346 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 SLFNL1Q499Z3 407 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 TMEM240Q5SV17 173 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 AKNAD1Q5T1N1 836 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 SNRNP48Q6IEG0 339 aaKnown RBP11.93□□□□□ -0.5
RFFL-208ENST00000581039 C16orf59Q7L2K0 433 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 ATXN2LQ8WWM7 1075 aaKnown RBP11.93□□□□□ -0.5
RFFL-208ENST00000581039 PBX4Q9BYU1 374 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 BOLA2Q9H3K6 86 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 SLC4A4Q9Y6R1 1079 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 NAV1Q8NEY1 1877 aa11.93□□□□□ -0.5
RFFL-208ENST00000581039 ZNFX1Q9P2E3 1918 aaKnown RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 A0A0U1RQG5 324 aaPredicted RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 MYADML2A6NDP7 307 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 GRXCR1A8MXD5 290 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ARVCFO00192 962 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 TLR3O15455 904 aaKnown RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 ZBED4O75132 1171 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ASGR1P07306 291 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 CSF2RAP15509 400 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 CST5P28325 142 aaPredicted RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 PBX2P40425 430 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ACVR2BQ13705 512 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 GNASQ5JWF2 1037 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 CTR9Q6PD62 1173 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ZNF365Q70YC5 407 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ZNF467Q7Z7K2 595 aaPredicted RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 CPXCR1Q8N123 301 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 ANKRD35Q8N283 1001 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 PRPF38AQ8NAV1 312 aaKnown RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 NUP88Q99567 741 aaPredicted RBP11.92□□□□□ -0.5
RFFL-208ENST00000581039 ABHD16BQ9H3Z7 469 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 PRDM12Q9H4Q4 367 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 MSRAQ9UJ68 235 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 RIPK3Q9Y572 518 aa11.92□□□□□ -0.5
RFFL-208ENST00000581039 DNAJC25-GNG10A0A024R161 153 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 F5H6K3 240 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 HMMRO75330 724 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 ACRP10323 421 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 ATP5JP18859 108 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 IGFBP4P22692 258 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 KLRC3Q07444 240 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 UBE3CQ15386 1083 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 RAB30Q15771 203 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 CCDC144BQ3MJ40 725 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 RASIP1Q5U651 963 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 PSRC1Q6PGN9 363 aaPredicted RBP11.91□□□□□ -0.5
RFFL-208ENST00000581039 RPAP2Q8IXW5 612 aaPredicted RBP11.91□□□□□ -0.5
RFFL-208ENST00000581039 IL27Q8NEV9 243 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 ASB2Q96Q27 587 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 PPP1R12CQ9BZL4 782 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 MKNK2Q9HBH9 465 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.91□□□□□ -0.5
RFFL-208ENST00000581039 THEGQ9P2T0 379 aa11.91□□□□□ -0.5
RFFL-208ENST00000581039 ATP2A1O14983 1001 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 RAB11FIP3O75154 756 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 GJA9P57773 515 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 IRX5P78411 483 aaPredicted RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 MRPS5P82675 430 aaKnown RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 CCDC85BQ15834 202 aaPredicted RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 ZSCAN25Q6NSZ9 544 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 PANK1Q8TE04 598 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 HAUS7Q99871 368 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.9□□□□□ -0.5
RFFL-208ENST00000581039 UPF3AQ9H1J1 476 aaKnown RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 MTIF3Q9H2K0 278 aaKnown RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 NYAP2Q9P242 653 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 ARPP21Q9UBL0 812 aaPredicted RBP11.9□□□□□ -0.5
RFFL-208ENST00000581039 FBXO40Q9UH90 709 aa11.9□□□□□ -0.5
RFFL-208ENST00000581039 NDUFB10O96000 172 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 FGBP02675 491 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 CYP2C18P33260 490 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 NOL8Q76FK4 1167 aaKnown RBP11.89□□□□□ -0.51
RFFL-208ENST00000581039 ARMCX2Q7L311 632 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 FAM126BQ8IXS8 530 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 STK11IPQ8N1F8 1099 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 CHST13Q8NET6 341 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms