RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MCCP23508 829 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 COPB2P35606 906 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 CACNB2Q08289 660 aaPredicted RBP28.2■■■□□ 2.1
SHMT1-206ENST00000579558 IMMTQ16891 758 aaKnown RBP28.2■■■□□ 2.1
SHMT1-206ENST00000579558 MFSD14CQ5VZR4 134 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 ABRAQ8N0Z2 381 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 FLRT1Q9NZU1 646 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 TMEM232C9JQI7 657 aa28.19■■■□□ 2.1
SHMT1-206ENST00000579558 CAPN2P17655 700 aa28.19■■■□□ 2.1
SHMT1-206ENST00000579558 IKQ13123 557 aaPredicted RBP28.19■■■□□ 2.1
SHMT1-206ENST00000579558 ESR2Q92731 530 aa28.19■■■□□ 2.1
SHMT1-206ENST00000579558 TEX13BQ9BXU2 312 aa28.19■■■□□ 2.1
SHMT1-206ENST00000579558 MTMR7Q9Y216 660 aa28.19■■■□□ 2.1
SHMT1-206ENST00000579558 SLC34A2O95436 690 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 STAT2P52630 851 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 SNRNP48Q6IEG0 339 aaKnown RBP28.18■■■□□ 2.1
SHMT1-206ENST00000579558 FAM160B2Q86V87 743 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 CPXCR1Q8N123 301 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 MMP19Q99542 508 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 CRISPLD2Q9H0B8 497 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 SLC5A4Q9NY91 659 aa28.18■■■□□ 2.1
SHMT1-206ENST00000579558 COBLO75128 1261 aa28.17■■■□□ 2.1
SHMT1-206ENST00000579558 FARP2O94887 1054 aaPredicted RBP28.17■■■□□ 2.1
SHMT1-206ENST00000579558 TOP1P11387 765 aaKnown RBP28.17■■■□□ 2.1
SHMT1-206ENST00000579558 KCTD1Q719H9 257 aa28.17■■■□□ 2.1
SHMT1-206ENST00000579558 CHURC1Q8WUH1 139 aa28.17■■■□□ 2.1
SHMT1-206ENST00000579558 TMEM47Q9BQJ4 181 aa28.17■■■□□ 2.1
SHMT1-206ENST00000579558 SLC38A10Q9HBR0 1119 aa28.17■■■□□ 2.1
SHMT1-206ENST00000579558 SLC4A3P48751 1232 aa28.16■■■□□ 2.1
SHMT1-206ENST00000579558 RCSD1Q6JBY9 416 aa28.16■■■□□ 2.1
SHMT1-206ENST00000579558 RASGRP2Q7LDG7 609 aa28.16■■■□□ 2.1
SHMT1-206ENST00000579558 RAVER2Q9HCJ3 691 aaKnown RBP28.16■■■□□ 2.1
SHMT1-206ENST00000579558 ZNFX1Q9P2E3 1918 aaKnown RBP28.16■■■□□ 2.1
SHMT1-206ENST00000579558 ATP2A1O14983 1001 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 CCND3P30281 292 aaPredicted RBP28.15■■■□□ 2.1
SHMT1-206ENST00000579558 NT5C2P49902 561 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 KCTD2Q14681 263 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 CCDC96Q2M329 555 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 UBE2Q1Q7Z7E8 422 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 DCAF4Q8WV16 495 aa28.15■■■□□ 2.1
SHMT1-206ENST00000579558 PLA2G6O60733 806 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 KDM4AO75164 1064 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 FDX1P10109 184 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 CYP2C19P33261 490 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 PRPF38BQ5VTL8 546 aaKnown RBP28.14■■■□□ 2.1
SHMT1-206ENST00000579558 OLFML2BQ68BL8 750 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 TTC14Q96N46 770 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 ZKSCAN3Q9BRR0 538 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 RIPK3Q9Y572 518 aa28.14■■■□□ 2.1
SHMT1-206ENST00000579558 B4E1Z4 1266 aa28.13■■■□□ 2.09
SHMT1-206ENST00000579558 OAZ1P54368 228 aa28.13■■■□□ 2.09
SHMT1-206ENST00000579558 SGSM2O43147 1006 aa28.12■■■□□ 2.09
SHMT1-206ENST00000579558 PGK2P07205 417 aa28.12■■■□□ 2.09
SHMT1-206ENST00000579558 PTH1RQ03431 593 aa28.12■■■□□ 2.09
SHMT1-206ENST00000579558 SKAP1Q86WV1 359 aa28.12■■■□□ 2.09
SHMT1-206ENST00000579558 IQCA1Q86XH1 822 aa28.12■■■□□ 2.09
SHMT1-206ENST00000579558 IGHA2P01877 340 aa28.11■■■□□ 2.09
SHMT1-206ENST00000579558 MAML3Q96JK9 1138 aa28.11■■■□□ 2.09
SHMT1-206ENST00000579558 KRT23Q9C075 422 aa28.11■■■□□ 2.09
SHMT1-206ENST00000579558 CNNM2Q9H8M5 875 aa28.11■■■□□ 2.09
SHMT1-206ENST00000579558 CCDC178Q5BJE1 867 aa28.1■■■□□ 2.09
SHMT1-206ENST00000579558 ANKLE1Q8NAG6 615 aa28.1■■■□□ 2.09
SHMT1-206ENST00000579558 OGDHLQ9ULD0 1010 aa28.1■■■□□ 2.09
SHMT1-206ENST00000579558 PRR12Q9ULL5 1215 aa28.1■■■□□ 2.09
SHMT1-206ENST00000579558 PLXNA1Q9UIW2 1896 aa28.1■■■□□ 2.09
SHMT1-206ENST00000579558 CNGA1P29973 690 aa28.09■■■□□ 2.09
SHMT1-206ENST00000579558 DGKHQ86XP1 1220 aa28.09■■■□□ 2.09
SHMT1-206ENST00000579558 CCDC136Q96JN2 1154 aa28.09■■■□□ 2.09
SHMT1-206ENST00000579558 HTATIP2Q9BUP3 242 aa28.09■■■□□ 2.09
SHMT1-206ENST00000579558 FBXO40Q9UH90 709 aa28.09■■■□□ 2.09
SHMT1-206ENST00000579558 U3KPZ7 1027 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-206ENST00000579558 FRMPD2Q68DX3 1309 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-206ENST00000579558 PDHBP11177 359 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 CYBAP13498 195 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 ZNF792Q3KQV3 632 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 TTBK2Q6IQ55 1244 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 TRPV1Q8NER1 839 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 CHST13Q8NET6 341 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 DIS3LQ8TF46 1054 aaKnown RBP28.08■■■□□ 2.09
SHMT1-206ENST00000579558 DDX11Q96FC9 970 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 PAWRQ96IZ0 340 aaKnown RBP28.08■■■□□ 2.09
SHMT1-206ENST00000579558 GPCPD1Q9NPB8 672 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 ZSWIM5Q9P217 1185 aa28.08■■■□□ 2.09
SHMT1-206ENST00000579558 DIS3Q9Y2L1 958 aaKnown RBP28.08■■■□□ 2.09
SHMT1-206ENST00000579558 SLC16A2P36021 539 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 SNAP25P60880 206 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 LHX8Q68G74 356 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 CCDC174Q6PII3 467 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 AGBL1Q96MI9 1066 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 ZSCAN10Q96SZ4 725 aaPredicted RBP28.07■■■□□ 2.08
SHMT1-206ENST00000579558 HOMER2Q9NSB8 354 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 ZNF536O15090 1300 aa28.07■■■□□ 2.08
SHMT1-206ENST00000579558 NEFLP07196 543 aa28.06■■■□□ 2.08
SHMT1-206ENST00000579558 SYDE2Q5VT97 1194 aa28.06■■■□□ 2.08
SHMT1-206ENST00000579558 BTNL9Q6UXG8 535 aa28.06■■■□□ 2.08
SHMT1-206ENST00000579558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.06■■■□□ 2.08
SHMT1-206ENST00000579558 NECAB2Q7Z6G3 386 aa28.06■■■□□ 2.08
SHMT1-206ENST00000579558 DPF3Q92784 378 aa28.06■■■□□ 2.08
SHMT1-206ENST00000579558 DDX20Q9UHI6 824 aaKnown RBP28.06■■■□□ 2.08
SHMT1-206ENST00000579558 FRMPD3Q5JV73 1810 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms