RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 AIFM3Q96NN9 605 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 ADD2P35612 726 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 ADGRA1Q86SQ6 560 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 IQCA1Q86XH1 822 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 PANX2Q96RD6 677 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 CEP126Q9P2H0 1117 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 MAN1B1Q9UKM7 699 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 HPS5Q9UPZ3 1129 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 LRRC37AA6NMS7 1700 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 FGAP02671 866 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 KRT40Q6A162 431 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF526Q8TF50 670 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-212ENST00000574799 MROH7-TTC4A0A0A0MT08 1334 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 SYNRGQ9UMZ2 1314 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 SMIM22K7EJ46 135 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 KRT86O43790 486 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 CPP00450 1065 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 FDPSP14324 419 aaKnown RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 USP14P54578 494 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 KIF23Q02241 960 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 FMR1Q06787 632 aaKnown RBP eCLIP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 JAKMIP2Q96AA8 810 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 SLC26A6Q9BXS9 759 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 KIF28PB7ZC32 967 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 PAFAH1B1P43034 410 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 RASGRF1Q13972 1273 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 CFAP58Q5T655 872 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 SHC4Q6S5L8 630 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 TMEM139Q8IV31 216 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 MB21D2Q8IYB1 491 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 PLCD4Q9BRC7 762 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 EPB41L4AQ9HCS5 686 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 TAB2Q9NYJ8 693 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 E7EVH7 732 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 EIF3HO15372 352 aaKnown RBP eCLIP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 PDE6BP35913 854 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 TBC1D9BQ66K14 1250 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 METTL16Q86W50 562 aaKnown RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 ENOX1Q8TC92 643 aaKnown RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 IFT81Q8WYA0 676 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 TRIM6Q9C030 488 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 VIPAS39Q9H9C1 493 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 SENP2Q9HC62 589 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 PPANQ9NQ55 473 aaKnown RBP10.72□□□□□ -0.69
CCDC40-212ENST00000574799 INTS13Q9NVM9 706 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 TUBE1Q9UJT0 475 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 CCDC88AQ3V6T2 1871 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 MYH2Q9UKX2 1941 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 CNTNAP4Q9C0A0 1308 aa10.72□□□□□ -0.69
CCDC40-212ENST00000574799 GOLGA8KD6RF30 607 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF213O14771 459 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 UBXN1Q04323 297 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 SF3A3Q12874 501 aaKnown RBP eCLIP10.71□□□□□ -0.694e-9■■■■■ 57
CCDC40-212ENST00000574799 SF3B2Q13435 895 aaKnown RBP10.71□□□□□ -0.69
CCDC40-212ENST00000574799 ERFEQ4G0M1 354 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 CCDC40Q4G0X9 1142 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 EHBP1Q8NDI1 1231 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 NCOA7Q8NI08 942 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 INCENPQ9NQS7 918 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF804BA4D1E1 1349 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 NRXN2Q9P2S2 1712 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 ANKRD18BA2A2Z9 1011 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 MFAP3LO75121 409 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 SYF2O95926 243 aaKnown RBP10.71□□□□□ -0.69
CCDC40-212ENST00000574799 TM4SF1P30408 202 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 C2orf54Q08AI8 447 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 RRP12Q5JTH9 1297 aaKnown RBP10.71□□□□□ -0.69
CCDC40-212ENST00000574799 METTL24Q5JXM2 366 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 SLC9C2Q5TAH2 1124 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 TBC1D10CQ8IV04 446 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 SMYD4Q8IYR2 804 aaPredicted RBP10.71□□□□□ -0.69
CCDC40-212ENST00000574799 STAMQ92783 540 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 C8orf37Q96NL8 207 aa10.71□□□□□ -0.69
CCDC40-212ENST00000574799 MAGEC2Q9UBF1 373 aaPredicted RBP10.71□□□□□ -0.69
CCDC40-212ENST00000574799 FOCADQ5VW36 1801 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 CDC27P30260 824 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 SPA17Q15506 151 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 SNCBQ16143 134 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 RRAGBQ5VZM2 374 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 KANK3Q6NY19 840 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 KIRREL3Q8IZU9 778 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 RSRC1Q96IZ7 334 aaKnown RBP10.71□□□□□ -0.7
CCDC40-212ENST00000574799 MMS19Q96T76 1030 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 KLC4Q9NSK0 619 aa10.71□□□□□ -0.7
CCDC40-212ENST00000574799 EPN1Q9Y6I3 576 aaPredicted RBP10.71□□□□□ -0.7
CCDC40-212ENST00000574799 GOLGA8AA7E2F4 631 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 MEFVO15553 781 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-212ENST00000574799 KLRK1P26718 216 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 HLTFQ14527 1009 aaKnown RBP eCLIP10.7□□□□□ -0.7
CCDC40-212ENST00000574799 CCDC96Q2M329 555 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 TRIM22Q8IYM9 498 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 TRIM10Q9UDY6 481 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 BAIAP2L1Q9UHR4 511 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 CTNND2Q9UQB3 1225 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 MAPK8IP1Q9UQF2 711 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 LUC7L2Q9Y383 392 aaKnown RBP10.7□□□□□ -0.7
CCDC40-212ENST00000574799 ONECUT3O60422 494 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-212ENST00000574799 CDC25AP30304 524 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 VAV2P52735 878 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 GSCP56915 257 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms