RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PGK1P00558 417 aa25.17■■□□□ 1.62
VPS53-216ENST00000574029 AKR1A1P14550 325 aa25.17■■□□□ 1.62
VPS53-216ENST00000574029 SNRNP48Q6IEG0 339 aaKnown RBP25.17■■□□□ 1.62
VPS53-216ENST00000574029 TRIM43Q96BQ3 446 aaPredicted RBP25.17■■□□□ 1.62
VPS53-216ENST00000574029 CLIP2Q9UDT6 1046 aa25.17■■□□□ 1.62
VPS53-216ENST00000574029 DNAJC25-GNG10A0A024R161 153 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 TDO2P48775 406 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 TLE2Q04725 743 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 MAMDC4Q6UXC1 1216 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 ZNF444Q8N0Y2 327 aaPredicted RBP25.16■■□□□ 1.62
VPS53-216ENST00000574029 GUCD1Q96NT3 240 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 ZNF287Q9HBT7 754 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 SYNPO2Q9UMS6 1093 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 CNPY2Q9Y2B0 182 aa25.16■■□□□ 1.62
VPS53-216ENST00000574029 SYNGAP1Q96PV0 1343 aa25.15■■□□□ 1.62
VPS53-216ENST00000574029 PATL2C9JE40 543 aaKnown RBP25.15■■□□□ 1.62
VPS53-216ENST00000574029 ADAMTS4O75173 837 aa25.15■■□□□ 1.62
VPS53-216ENST00000574029 C9orf50Q5SZB4 431 aa25.15■■□□□ 1.62
VPS53-216ENST00000574029 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.15■■□□□ 1.62
VPS53-216ENST00000574029 CEP95Q96GE4 821 aa25.15■■□□□ 1.62
VPS53-216ENST00000574029 A0A1W2PQ45 241 aaPredicted RBP25.14■■□□□ 1.62
VPS53-216ENST00000574029 A0A1W2PQY0 241 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 ZBED4O75132 1171 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 PRDM1O75626 825 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 SNAI1O95863 264 aaPredicted RBP25.14■■□□□ 1.62
VPS53-216ENST00000574029 APPP05067 770 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 IFNL3Q8IZI9 196 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 LENG1Q96BZ8 264 aaPredicted RBP25.14■■□□□ 1.62
VPS53-216ENST00000574029 DDX11Q96FC9 970 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 TSEN34Q9BSV6 310 aaKnown RBP25.14■■□□□ 1.62
VPS53-216ENST00000574029 MTMR4Q9NYA4 1195 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 TACC3Q9Y6A5 838 aa25.14■■□□□ 1.62
VPS53-216ENST00000574029 TTC41PQ6P2S7 1318 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 CLTBP09497 229 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 LRRFIP1Q32MZ4 808 aaKnown RBP25.13■■□□□ 1.61
VPS53-216ENST00000574029 ZNF467Q7Z7K2 595 aaPredicted RBP25.13■■□□□ 1.61
VPS53-216ENST00000574029 CPXCR1Q8N123 301 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 GMCL1P1Q8NEA9 526 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 SLC38A10Q9HBR0 1119 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 FEM1BQ9UK73 627 aa25.13■■□□□ 1.61
VPS53-216ENST00000574029 TTLL1O95922 423 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 ZNF697Q5TEC3 545 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 KIFC2Q96AC6 838 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 RAVER2Q9HCJ3 691 aaKnown RBP25.12■■□□□ 1.61
VPS53-216ENST00000574029 FAM184BQ9ULE4 1060 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 PLIN4Q96Q06 1357 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 SYNRGQ9UMZ2 1314 aa25.12■■□□□ 1.61
VPS53-216ENST00000574029 KIAA0355O15063 1070 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 ITGB8P26012 769 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 KLHDC9Q8NEP7 349 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 NEDD1Q8NHV4 660 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 PI4K2BQ8TCG2 481 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 FAM161BQ96MY7 647 aa25.11■■□□□ 1.61
VPS53-216ENST00000574029 SEC62Q99442 399 aaKnown RBP25.11■■□□□ 1.61
VPS53-216ENST00000574029 CTDP1Q9Y5B0 961 aaPredicted RBP25.11■■□□□ 1.61
VPS53-216ENST00000574029 SLC4A3P48751 1232 aa25.1■■□□□ 1.61
VPS53-216ENST00000574029 ACLYP53396 1101 aa25.1■■□□□ 1.61
VPS53-216ENST00000574029 OAZ1P54368 228 aa25.1■■□□□ 1.61
VPS53-216ENST00000574029 LRRC47Q8N1G4 583 aaKnown RBP25.1■■□□□ 1.61
VPS53-216ENST00000574029 NACAP1Q9BZK3 213 aa25.1■■□□□ 1.61
VPS53-216ENST00000574029 ERC2O15083 957 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 SMAD3P84022 425 aaKnown RBP25.09■■□□□ 1.61
VPS53-216ENST00000574029 PDE4BQ07343 736 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 CCSAPQ6IQ19 270 aaPredicted RBP25.09■■□□□ 1.61
VPS53-216ENST00000574029 ANKRD33Q7Z3H0 272 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 CHST13Q8NET6 341 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 FGD4Q96M96 766 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 TOX2Q96NM4 488 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 FBXO40Q9UH90 709 aa25.09■■□□□ 1.61
VPS53-216ENST00000574029 ZHX1Q9UKY1 873 aaPredicted RBP25.09■■□□□ 1.61
VPS53-216ENST00000574029 MOXD2PA6NHM9 499 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 PQBP1O60828 265 aaKnown RBP25.08■■□□□ 1.61
VPS53-216ENST00000574029 DUSP11O75319 330 aaKnown RBP25.08■■□□□ 1.61
VPS53-216ENST00000574029 TSPY3P0CV98 308 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 TSPY8P0CW00 308 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 BMP3P12645 472 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 ACVR2BQ13705 512 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 ZMYM1Q5SVZ6 1142 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 SLFN13Q68D06 897 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 ANKRD35Q8N283 1001 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 NUP133Q8WUM0 1156 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 STARD7Q9NQZ5 370 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.08■■□□□ 1.61
VPS53-216ENST00000574029 PCDHB15Q9Y5E8 787 aa25.08■■□□□ 1.61
VPS53-216ENST00000574029 FDX1P10109 184 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 RAG1P15918 1043 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 CST5P28325 142 aaPredicted RBP25.07■■□□□ 1.6
VPS53-216ENST00000574029 PPARAQ07869 468 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 FAAP100Q0VG06 881 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 KCNA10Q16322 511 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 OTUD7AQ8TE49 926 aaPredicted RBP25.07■■□□□ 1.6
VPS53-216ENST00000574029 NAPBQ9H115 298 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 SEMA6BQ9H3T3 888 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 ABHD16BQ9H3Z7 469 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 MCM3APO60318 1980 aa25.07■■□□□ 1.6
VPS53-216ENST00000574029 SLC3A2P08195 630 aaKnown RBP25.06■■□□□ 1.6
VPS53-216ENST00000574029 EPHB4P54760 987 aa25.06■■□□□ 1.6
VPS53-216ENST00000574029 TFAP4Q01664 338 aa25.06■■□□□ 1.6
VPS53-216ENST00000574029 FSD1Q9BTV5 496 aa25.06■■□□□ 1.6
VPS53-216ENST00000574029 TMEM39AQ9NV64 488 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms