RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 MSANTD4Q8NCY6 345 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 PDLIM2Q96JY6 352 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 A2ML1A8K2U0 1454 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 BUB1O43683 1085 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 SARM1Q6SZW1 724 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 SREK1Q8WXA9 508 aaKnown RBP16.99■□□□□ 0.31
CIITA-204ENST00000570546 PGBD1Q96JS3 809 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 CLUL1Q15846 466 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 PRKAB2O43741 272 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 NR5A1Q13285 461 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 EPHA10Q5JZY3 1008 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 PANK4Q9NVE7 773 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 DDX39AO00148 427 aaKnown RBP16.98■□□□□ 0.31
CIITA-204ENST00000570546 GUCY2FP51841 1108 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 GBP6Q6ZN66 633 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 LCORLQ8N3X6 602 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 CCDC63Q8NA47 563 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.98■□□□□ 0.31
CIITA-204ENST00000570546 PDE11AQ9HCR9 933 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 B4DLN1 442 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 GOLGA8KD6RF30 607 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 ATP8B1O43520 1251 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 IGKV5-2P06315 115 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 SLFN14P0C7P3 912 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 IFNAR1P17181 557 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 ENOX1Q8TC92 643 aaKnown RBP16.98■□□□□ 0.31
CIITA-204ENST00000570546 AIFM3Q96NN9 605 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 MAGEF1Q9HAY2 307 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 BCRP11274 1271 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 ARHGAP25P42331 645 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 PPARDQ03181 441 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 FAM71BQ8TC56 605 aa16.98■□□□□ 0.31
CIITA-204ENST00000570546 CNOT6LQ96LI5 555 aaKnown RBP16.98■□□□□ 0.31
CIITA-204ENST00000570546 H7C1W4 665 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 DPP8Q6V1X1 898 aaPredicted RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 U2AF1L4Q8WU68 220 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 PCDHA4Q9UN74 947 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 TCP1P17987 556 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 TCP10Q12799 353 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 LIN9Q5TKA1 542 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 CEP128Q6ZU80 1094 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 INTS8Q75QN2 995 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 CROCCP2Q86T23 111 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 GPHNQ9NQX3 736 aaPredicted RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 SAMSN1Q9NSI8 373 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 ZSWIM5Q9P217 1185 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 DCAF8L1A6NGE4 600 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 XRCC5P13010 732 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 FAM98CQ17RN3 349 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 MFSD14BQ5SR56 506 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 TUBGCP2Q9BSJ2 902 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 MED4Q9NPJ6 270 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 E7EVH7 732 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 ZNF365Q70YC5 407 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 PIH1D3Q9NQM4 214 aaKnown RBP16.97■□□□□ 0.31
CIITA-204ENST00000570546 MYO1AQ9UBC5 1043 aa16.97■□□□□ 0.31
CIITA-204ENST00000570546 GNGT1P63211 74 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 ARID5BQ14865 1188 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 CARD10Q9BWT7 1032 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 GOLPH3LQ9H4A5 285 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 PSTPIP2Q9H939 334 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 AMFRQ9UKV5 643 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 SRPRBQ9Y5M8 271 aaKnown RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 KCNK3O14649 394 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 LONRF2Q1L5Z9 754 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 ZNF658Q5TYW1 1059 aaPredicted RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 PCDHA12Q9UN75 941 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 ZBTB1Q9Y2K1 713 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 PCDHB13Q9Y5F0 798 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 SOWAHDA6NJG2 315 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 LAD1O00515 517 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 LACTBP83111 547 aaPredicted RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 ZYXQ15942 572 aaKnown RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 CEP63Q96MT8 703 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 PLCB1Q9NQ66 1216 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 USP40Q9NVE5 1235 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 DDX25Q9UHL0 483 aaKnown RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 PCDHB6Q9Y5E3 794 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 POLR2FP61218 127 aaKnown RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 DYNLL1P63167 89 aaKnown RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 ARHGAP44Q17R89 818 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 TAOK1Q7L7X3 1001 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.96■□□□□ 0.31
CIITA-204ENST00000570546 ASIC3Q9UHC3 531 aa16.96■□□□□ 0.31
CIITA-204ENST00000570546 CEP152O94986 1710 aa16.96■□□□□ 0.3
CIITA-204ENST00000570546 LMTK3Q96Q04 1460 aa16.96■□□□□ 0.3
CIITA-204ENST00000570546 CFBP00751 764 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 CYP2E1P05181 493 aaPredicted RBP16.95■□□□□ 0.3
CIITA-204ENST00000570546 EEF1GP26641 437 aaKnown RBP16.95■□□□□ 0.3
CIITA-204ENST00000570546 IL6STP40189 918 aaPredicted RBP16.95■□□□□ 0.3
CIITA-204ENST00000570546 NLRP10Q86W26 655 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 PLA2G4DQ86XP0 818 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 SMC6Q96SB8 1091 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 CUEDC2Q9H467 287 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 SEC31BQ9NQW1 1179 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 SOS2Q07890 1332 aaPredicted RBP16.95■□□□□ 0.3
CIITA-204ENST00000570546 ATP1A3P13637 1013 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 BTDP43251 543 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 SLFNL1Q499Z3 407 aa16.95■□□□□ 0.3
CIITA-204ENST00000570546 TPH2Q8IWU9 490 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms