RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HERVK_113P62684 666 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 SART3Q15020 963 aaKnown RBP10.86□□□□□ -0.67
VPS35-211ENST00000569950 C17orf99Q6UX52 265 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 TMTC2Q8N394 836 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 SRBD1Q8N5C6 995 aaKnown RBP10.86□□□□□ -0.67
VPS35-211ENST00000569950 FANCBQ8NB91 859 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 SHISA4Q96DD7 197 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 ATG4CQ96DT6 458 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 RIOX1Q9H6W3 641 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 BTBD7Q9P203 1132 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 PRR12Q9ULL5 1215 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 MTMR7Q9Y216 660 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 CASP8AP2Q9UKL3 1982 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 CENPFP49454 3210 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 CNTNAP5Q8WYK1 1306 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 ERICH2A1L162 156 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 VWA5AO00534 786 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 CA12O43570 354 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 PFKFB2O60825 505 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 PPP1R11O60927 126 aaPredicted RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 CTGFP29279 349 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 Q3C1V9 767 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 ASPRV1Q53RT3 343 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 TMTC3Q6ZXV5 915 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 MICU3Q86XE3 530 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 CCDC144CPQ8IYA2 1237 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 CMTR1Q8N1G2 835 aaKnown RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 ZNF274Q96GC6 653 aaPredicted RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 SLF1Q9BQI6 1058 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 UBA5Q9GZZ9 404 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 JMJD4Q9H9V9 463 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 UPF2Q9HAU5 1272 aaKnown RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 NCOA5Q9HCD5 579 aaKnown RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 MORF4L1Q9UBU8 362 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 ZNF214Q9UL59 606 aaPredicted RBP10.85□□□□□ -0.67
VPS35-211ENST00000569950 SLC12A7Q9Y666 1083 aa10.85□□□□□ -0.67
VPS35-211ENST00000569950 ZNF236Q9UL36 1845 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 CCDC69A6NI79 296 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 GOLGA8BA8MQT2 603 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 KLRF2D3W0D1 207 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 ZBTB43O43298 467 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 TLR2O60603 784 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 FLOT1O75955 427 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 PARP1P09874 1014 aaKnown RBP10.84□□□□□ -0.67
VPS35-211ENST00000569950 ADD1P35611 737 aaKnown RBP10.84□□□□□ -0.67
VPS35-211ENST00000569950 SNAP25P60880 206 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 SCRN1Q12765 414 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 COG2Q14746 738 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 TMEM132BQ14DG7 1078 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 TAF1CQ15572 869 aaPredicted RBP10.84□□□□□ -0.67
VPS35-211ENST00000569950 CCDC96Q2M329 555 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 GPATCH4Q5T3I0 446 aaKnown RBP10.84□□□□□ -0.67
VPS35-211ENST00000569950 SYDE2Q5VT97 1194 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 CATIPQ7Z7H3 387 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 ADGRF4Q8IZF3 695 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 NUP133Q8WUM0 1156 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 TANGO6Q9C0B7 1094 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 RANBP17Q9H2T7 1088 aaKnown RBP10.84□□□□□ -0.67
VPS35-211ENST00000569950 SLC38A10Q9HBR0 1119 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 FEM1BQ9UK73 627 aa10.84□□□□□ -0.67
VPS35-211ENST00000569950 GOLGA8AA7E2F4 631 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 ATP2A1O14983 1001 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 RAD21O60216 631 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 TRPA1O75762 1119 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 TBC1D8O95759 1140 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 STAT2P52630 851 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 NFXL1Q6ZNB6 911 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 NECAB1Q8N987 351 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 PRPF38AQ8NAV1 312 aaKnown RBP10.83□□□□□ -0.68
VPS35-211ENST00000569950 GTF3C6Q969F1 213 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 SPZ1Q9BXG8 430 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 SAGE1Q9NXZ1 904 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 CPA4Q9UI42 421 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 RIPK3Q9Y572 518 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 PLXNA1Q9UIW2 1896 aa10.83□□□□□ -0.68
VPS35-211ENST00000569950 LRRC37A2A6NM11 1700 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 OPLAHO14841 1288 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 ALDH1A1P00352 501 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 CALM1P0DP23 149 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 CALM2P0DP24 149 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 CALM3P0DP25 149 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 FDPSP14324 419 aaKnown RBP10.82□□□□□ -0.68
VPS35-211ENST00000569950 SMARCA1P28370 1054 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 CCT2P78371 535 aaKnown RBP10.82□□□□□ -0.68
VPS35-211ENST00000569950 IRX3P78415 501 aaPredicted RBP10.82□□□□□ -0.68
VPS35-211ENST00000569950 PABPC4Q13310 644 aaKnown RBP eCLIP10.82□□□□□ -0.68
VPS35-211ENST00000569950 PKN1Q16512 942 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 RTN1Q16799 776 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 NOL8Q76FK4 1167 aaKnown RBP10.82□□□□□ -0.68
VPS35-211ENST00000569950 FAM160B2Q86V87 743 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 KIFC2Q96AC6 838 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 PIGSQ96S52 555 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 PARK7Q99497 189 aaKnown RBP10.82□□□□□ -0.68
VPS35-211ENST00000569950 PORCNQ9H237 461 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 HOXC10Q9NYD6 342 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 TSKSQ9UJT2 592 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 LIMCH1Q9UPQ0 1083 aa10.82□□□□□ -0.68
VPS35-211ENST00000569950 RABGAP1Q9Y3P9 1069 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms