RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LAMA4Q16363 1823 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 KCNQ4P56696 695 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 PTPROQ16827 1216 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 SRBD1Q8N5C6 995 aaKnown RBP16.23■□□□□ 0.19
VPS35-210ENST00000568784 FAM71BQ8TC56 605 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 HPS3Q969F9 1004 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 SMARCAL1Q9NZC9 954 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 C5P01031 1676 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 H0YHG0 523 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 NT5DC1Q5TFE4 455 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 ZEB2O60315 1214 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 PKN1Q16512 942 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 CACNA2D4Q7Z3S7 1137 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 SRLQ86TD4 932 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 ANKRD18AQ8IVF6 992 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 VGLL2Q8N8G2 317 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 HAUS4Q9H6D7 363 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 TCP11L1Q9NUJ3 509 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 RBM28Q9NW13 759 aaKnown RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 RWDD2AQ9UIY3 292 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 EXOC5O00471 708 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 CDKAL1Q5VV42 579 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 SMIM5Q71RC9 77 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 DYMQ7RTS9 669 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 C2CD5Q86YS7 1000 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 TUBGCP2Q9BSJ2 902 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 PHF20Q9BVI0 1012 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 PLA2G12BQ9BX93 195 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 PRPF3O43395 683 aaKnown RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 CKAP4Q07065 602 aaKnown RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 ZNF658Q5TYW1 1059 aaPredicted RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 DZIP1Q86YF9 867 aaKnown RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 DHX37Q8IY37 1157 aaKnown RBP16.22■□□□□ 0.19
VPS35-210ENST00000568784 IFT81Q8WYA0 676 aa16.22■□□□□ 0.19
VPS35-210ENST00000568784 GOLGA6CA6NDK9 693 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 USO1O60763 962 aaKnown RBP16.21■□□□□ 0.19
VPS35-210ENST00000568784 GOLGA6DP0CG33 693 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 TRIM14Q14142 442 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 TTC31Q49AM3 519 aaPredicted RBP16.21■□□□□ 0.19
VPS35-210ENST00000568784 FAM76AQ8TAV0 307 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 GOLGA6AQ9NYA3 693 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 GOLGA6BA6NDN3 693 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 MB21D1Q8N884 522 aa16.21■□□□□ 0.19
VPS35-210ENST00000568784 KIF5BP33176 963 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 GGCXP38435 758 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 CCT5P48643 541 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 PMS1P54277 932 aaKnown RBP16.21■□□□□ 0.18
VPS35-210ENST00000568784 TFAP4Q01664 338 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 BLIDQ8IZY5 108 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 LRWD1Q9UFC0 647 aa16.21■□□□□ 0.18
VPS35-210ENST00000568784 CALM1P0DP23 149 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 CALM2P0DP24 149 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 CALM3P0DP25 149 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 KCTD16Q68DU8 428 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 TMTC3Q6ZXV5 915 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 SECISBP2LQ93073 1101 aaKnown RBP16.2■□□□□ 0.18
VPS35-210ENST00000568784 CRNKL1Q9BZJ0 848 aaKnown RBP16.2■□□□□ 0.18
VPS35-210ENST00000568784 SLC39A2Q9NP94 309 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 H7C1D1 291 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 MAP2K7O14733 419 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 NOC3LQ8WTT2 800 aaKnown RBP16.2■□□□□ 0.18
VPS35-210ENST00000568784 CARD10Q9BWT7 1032 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 LACRTQ9GZZ8 138 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 BUB1O43683 1085 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 LIG3P49916 1009 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 ATP1A2P50993 1020 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 TUBB2AQ13885 445 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS35-210ENST00000568784 TUBB2BQ9BVA1 445 aa16.2■□□□□ 0.18
VPS35-210ENST00000568784 RGPD5Q99666 1765 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 CYP19A1P11511 503 aaPredicted RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 ARHGAP25P42331 645 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 PAFAH1B1P43034 410 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 ATP2C1P98194 919 aaPredicted RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 APTXQ7Z2E3 356 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 NLRC4Q9NPP4 1024 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 SAP30BPQ9UHR5 308 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 CDHR2Q9BYE9 1310 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 TACC1O75410 805 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 DYNLL2Q96FJ2 89 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 EHD2Q9NZN4 543 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 EIF3CLB5ME19 914 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 ADAMTS3O15072 1205 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 CCNT1O60563 726 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 MCM3P25205 808 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 NAPAP54920 295 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 MUM1L1Q5H9M0 696 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 IQCEQ6IPM2 695 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 EHBP1Q8NDI1 1231 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 CNOT6LQ96LI5 555 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 EIF3CQ99613 913 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 IFIH1Q9BYX4 1025 aaKnown RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 NHEJ1Q9H9Q4 299 aaPredicted RBP16.19■□□□□ 0.18
VPS35-210ENST00000568784 MLXIPQ9HAP2 919 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 SAMM50Q9Y512 469 aa16.19■□□□□ 0.18
VPS35-210ENST00000568784 SOGA3Q5TF21 947 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 AMOTL1Q8IY63 956 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 MSANTD4Q8NCY6 345 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 LIMA1Q9UHB6 759 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms