RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZMYM5Q9UJ78 669 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 MINPP1Q9UNW1 487 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 PRAMEF1O95521 474 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ACRP10323 421 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 TCF3P15923 654 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 GUCY2CP25092 1073 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 TXKP42681 527 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ANAPC15P60006 121 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ERVFC1P60507 584 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 DMTNQ08495 405 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ZYXQ15942 572 aaKnown RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 TMEM67Q5HYA8 995 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 FYB2Q5VWT5 728 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 MPZL3Q6UWV2 235 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 WAPLQ7Z5K2 1190 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ENOX1Q8TC92 643 aaKnown RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 DHX38Q92620 1227 aaKnown RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 TCTN2Q96GX1 697 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 SRRTQ9BXP5 876 aaKnown RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 HDAC8Q9BY41 377 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 FOXP3Q9BZS1 431 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 YY1AP1Q9H869 796 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 CAPN10Q9HC96 672 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 RRAGDQ9NQL2 400 aaPredicted RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 CHST7Q9NS84 486 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 SUCOQ9UBS9 1254 aaKnown RBP4.12□□□□□ -1.75
VPS35-208ENST00000568612 CARMIL2Q6F5E8 1435 aa4.12□□□□□ -1.75
VPS35-208ENST00000568612 ZCCHC6Q5VYS8 1495 aaKnown RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 C9IYK1 514 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 SIGLEC6O43699 453 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 KIF20AO95235 890 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 SYPP08247 313 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 TRHRP34981 398 aaPredicted RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 SOX9P48436 509 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 PCBP3P57721 371 aaKnown RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 DUSP4Q13115 394 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 AUHQ13825 339 aaKnown RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 MLANAQ16655 118 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 NOL9Q5SY16 702 aaKnown RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 DCAF15Q66K64 600 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 INTS3Q68E01 1043 aaKnown RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 UNC5AQ6ZN44 842 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 VPS37DQ86XT2 251 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 OXR1Q8N573 874 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 RBBP8NLQ8NC74 664 aaPredicted RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 DAGLBQ8NCG7 672 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 ABHD4Q8TB40 342 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 RASGRP4Q8TDF6 673 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 SYTL5Q8TDW5 730 aaPredicted RBP4.11□□□□□ -1.75
VPS35-208ENST00000568612 MYLIPQ8WY64 445 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 ANAPC16Q96DE5 110 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 KRTAP4-8Q9BYQ9 185 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 C19orf44Q9H6X5 657 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 C19orf73Q9NVV2 129 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 TCFL5Q9UL49 500 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 EEA1Q15075 1411 aa4.11□□□□□ -1.75
VPS35-208ENST00000568612 LRRC10BA6NIK2 292 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 VGLL3A8MV65 326 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 SSBP05455 408 aaKnown RBP eCLIP4.1□□□□□ -1.75
VPS35-208ENST00000568612 GLI1P08151 1106 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 ZGLP1P0C6A0 271 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 GJA8P48165 433 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 PMS1P54277 932 aaKnown RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 TEKQ02763 1124 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 GNL2Q13823 731 aaKnown RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 BBS9Q3SYG4 887 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 GNPTABQ3T906 1256 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 CC2D1BQ5T0F9 858 aaKnown RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 OGFOD2Q6N063 350 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 RNF111Q6ZNA4 994 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 PPFIBP1Q86W92 1011 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 EGFL6Q8IUX8 553 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 C7orf61Q8IZ16 206 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 TAB3Q8N5C8 712 aaPredicted RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 USHBP1Q8N6Y0 703 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 ZNF655Q8N720 491 aaPredicted RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 LIN37Q96GY3 246 aaPredicted RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 CDADC1Q9BWV3 514 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 CWC22Q9HCG8 908 aaKnown RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 GPR160Q9UJ42 338 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 PCDHB10Q9UN67 800 aa4.1□□□□□ -1.75
VPS35-208ENST00000568612 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.1□□□□□ -1.75
VPS35-208ENST00000568612 UNC13AQ9UPW8 1703 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 TTC36A6NLP5 189 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 E9PSI1 815 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 APPP05067 770 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 GIPRP48546 466 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 OS9Q13438 667 aaPredicted RBP4.09□□□□□ -1.75
VPS35-208ENST00000568612 RALBP1Q15311 655 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 SLC14A2Q15849 920 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 CWF19L1Q69YN2 538 aaKnown RBP4.09□□□□□ -1.75
VPS35-208ENST00000568612 CRTC3Q6UUV7 619 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 ZPBP2Q6X784 338 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 MTERF4Q7Z6M4 381 aaKnown RBP4.09□□□□□ -1.75
VPS35-208ENST00000568612 PDZD8Q8NEN9 1154 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 OR6P1Q8NGX9 317 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 SMARCC1Q92922 1105 aaPredicted RBP4.09□□□□□ -1.75
VPS35-208ENST00000568612 BRF1Q92994 677 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 SEC16BQ96JE7 1060 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 FMNL2Q96PY5 1086 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms