RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 CCDC171Q6TFL3 1326 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 TSPY2A6NKD2 308 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 RAD21O60216 631 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 KCTD2Q14681 263 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 FAM47AQ5JRC9 791 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 B4GALNT3Q6L9W6 998 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 MMP19Q99542 508 aa22.1■■□□□ 1.13
SMPD3-209ENST00000567223 TRIM6-TRIM34B2RNG4 842 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 SEPT4O43236 478 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 BMP3P12645 472 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 SDSP20132 328 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 NMIQ13287 307 aaPredicted RBP22.09■■□□□ 1.13
SMPD3-209ENST00000567223 ZNF792Q3KQV3 632 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 SLFN13Q68D06 897 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 ZNF589Q86UQ0 364 aaPredicted RBP22.09■■□□□ 1.13
SMPD3-209ENST00000567223 TRPV1Q8NER1 839 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 IL17RBQ9NRM6 502 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 TCP11L1Q9NUJ3 509 aa22.09■■□□□ 1.13
SMPD3-209ENST00000567223 SUPT16HQ9Y5B9 1047 aaKnown RBP22.09■■□□□ 1.13
SMPD3-209ENST00000567223 DNAH12Q6ZR08 3092 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 A0A1W2PPC1 479 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 HIP1O00291 1037 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 ZBED4O75132 1171 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 STAT2P52630 851 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 CTDSPL2Q05D32 466 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 FAM160B2Q86V87 743 aa22.08■■□□□ 1.13
SMPD3-209ENST00000567223 LRRC47Q8N1G4 583 aaKnown RBP22.08■■□□□ 1.13
SMPD3-209ENST00000567223 DNAJC25-GNG10A0A024R161 153 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 DNM1LO00429 736 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 SNRNP48Q6IEG0 339 aaKnown RBP22.07■■□□□ 1.12
SMPD3-209ENST00000567223 ZNF467Q7Z7K2 595 aaPredicted RBP22.07■■□□□ 1.12
SMPD3-209ENST00000567223 CHURC1Q8WUH1 139 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 RILPL2Q969X0 211 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 FBXO40Q9UH90 709 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 TACC3Q9Y6A5 838 aa22.07■■□□□ 1.12
SMPD3-209ENST00000567223 ZNFX1Q9P2E3 1918 aaKnown RBP22.07■■□□□ 1.12
SMPD3-209ENST00000567223 SAMD1Q6SPF0 538 aaPredicted RBP22.06■■□□□ 1.12
SMPD3-209ENST00000567223 CHST13Q8NET6 341 aa22.06■■□□□ 1.12
SMPD3-209ENST00000567223 TINF2Q9BSI4 451 aa22.06■■□□□ 1.12
SMPD3-209ENST00000567223 STX8Q9UNK0 236 aa22.06■■□□□ 1.12
SMPD3-209ENST00000567223 PLXNA1Q9UIW2 1896 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 SLC1A4P43007 532 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 RCSD1Q6JBY9 416 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 MAMDC4Q6UXC1 1216 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 CHRDL2Q6WN34 429 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 STAG1Q8WVM7 1258 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 KIFC2Q96AC6 838 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 RIPK3Q9Y572 518 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 SYNGAP1Q96PV0 1343 aa22.05■■□□□ 1.12
SMPD3-209ENST00000567223 RANBP6O60518 1105 aaKnown RBP22.04■■□□□ 1.12
SMPD3-209ENST00000567223 CNGA1P29973 690 aa22.04■■□□□ 1.12
SMPD3-209ENST00000567223 FXR1P51114 621 aaKnown RBP eCLIP22.04■■□□□ 1.12
SMPD3-209ENST00000567223 ARRDC4Q8NCT1 418 aa22.04■■□□□ 1.12
SMPD3-209ENST00000567223 TTC14Q96N46 770 aa22.04■■□□□ 1.12
SMPD3-209ENST00000567223 RNF41Q9H4P4 317 aaPredicted RBP22.04■■□□□ 1.12
SMPD3-209ENST00000567223 LAMA4Q16363 1823 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 TMEM232C9JQI7 657 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 BMP8BP34820 402 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 AKNAD1Q5T1N1 836 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 DCAF4Q8WV16 495 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 INCENPQ9NQS7 918 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 PCDH10Q9P2E7 1040 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 RBM27Q9P2N5 1060 aaKnown RBP22.03■■□□□ 1.12
SMPD3-209ENST00000567223 CTDP1Q9Y5B0 961 aaPredicted RBP22.03■■□□□ 1.12
SMPD3-209ENST00000567223 LAMA3Q16787 3333 aa22.03■■□□□ 1.12
SMPD3-209ENST00000567223 PGK2P07205 417 aa22.02■■□□□ 1.12
SMPD3-209ENST00000567223 TKFCQ3LXA3 575 aa22.02■■□□□ 1.12
SMPD3-209ENST00000567223 DSCC1Q9BVC3 393 aa22.02■■□□□ 1.12
SMPD3-209ENST00000567223 ZNF536O15090 1300 aa22.02■■□□□ 1.12
SMPD3-209ENST00000567223 NMT2O60551 498 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 TOP1P11387 765 aaKnown RBP22.01■■□□□ 1.11
SMPD3-209ENST00000567223 MCCP23508 829 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 BTNL9Q6UXG8 535 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 MFSD6Q6ZSS7 791 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 CPXCR1Q8N123 301 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 GDF15Q99988 308 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 RAVER2Q9HCJ3 691 aaKnown RBP22.01■■□□□ 1.11
SMPD3-209ENST00000567223 DIAPH3Q9NSV4 1193 aa22.01■■□□□ 1.11
SMPD3-209ENST00000567223 ZNF865P0CJ78 1059 aaPredicted RBP22■■□□□ 1.11
SMPD3-209ENST00000567223 C7orf61Q8IZ16 206 aa22■■□□□ 1.11
SMPD3-209ENST00000567223 DDX11Q96FC9 970 aa22■■□□□ 1.11
SMPD3-209ENST00000567223 SZT2Q5T011 3432 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 ZNF213O14771 459 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 AKR1A1P14550 325 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 LRRC26Q2I0M4 334 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 C1orf53Q5VUE5 145 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 CWC27Q6UX04 472 aaKnown RBP21.99■■□□□ 1.11
SMPD3-209ENST00000567223 TBC1D10CQ8IV04 446 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 TMEM47Q9BQJ4 181 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 ACAD9Q9H845 621 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 CNPY2Q9Y2B0 182 aa21.99■■□□□ 1.11
SMPD3-209ENST00000567223 SNHG28P0DPA3 235 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 SNX17Q15036 470 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 PRAMEF19Q5SWL8 479 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 ESR2Q92731 530 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 PNMA2Q9UL42 364 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 PRR12Q9ULL5 1215 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 RAD50Q92878 1312 aa21.98■■□□□ 1.11
SMPD3-209ENST00000567223 KBTBD13C9JR72 458 aa21.97■■□□□ 1.11
SMPD3-209ENST00000567223 RARBP10826 455 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms