RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SEC24BO95487 1268 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 ERCC3P19447 782 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 PTPREP23469 700 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 HSPA4P34932 840 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 SLC16A2P36021 539 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 NT5C2P49902 561 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 EXOSC10Q01780 885 aaKnown RBP11.59□□□□□ -0.55
CLN3-220ENST00000566040 TROAPQ12815 778 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 MTFR1Q15390 333 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 CCL14Q16627 93 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 RIOX2Q8IUF8 465 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 STAG2Q8N3U4 1231 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 MB21D1Q8N884 522 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 PNMA1Q8ND90 353 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 SHCBP1Q8NEM2 672 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 NPLOC4Q8TAT6 608 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 TRIB2Q92519 343 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 CNNM2Q9H8M5 875 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 HOXC10Q9NYD6 342 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 FEM1BQ9UK73 627 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 SNX14Q9Y5W7 946 aa11.59□□□□□ -0.55
CLN3-220ENST00000566040 KIAA1217Q5T5P2 1943 aa11.58□□□□□ -0.55
CLN3-220ENST00000566040 POTEFA5A3E0 1075 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 SH2B2O14492 632 aaPredicted RBP11.58□□□□□ -0.56
CLN3-220ENST00000566040 RAD21O60216 631 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 COBLO75128 1261 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 HOXC6P09630 235 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 GOLGA8HP0CJ92 632 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 CPA1P15085 419 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 MAPK4P31152 587 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 SLC1A4P43007 532 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 STAT2P52630 851 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 MAP3K21Q5TCX8 1036 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 NBPF11Q86T75 865 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 PRPF38AQ8NAV1 312 aaKnown RBP11.58□□□□□ -0.56
CLN3-220ENST00000566040 NCOA7Q8NI08 942 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 KIFC2Q96AC6 838 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 SHISA4Q96DD7 197 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 USP26Q9BXU7 913 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 RANBP17Q9H2T7 1088 aaKnown RBP11.58□□□□□ -0.56
CLN3-220ENST00000566040 MAD2L2Q9UI95 211 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 MTMR7Q9Y216 660 aa11.58□□□□□ -0.56
CLN3-220ENST00000566040 DNAJC25-GNG10A0A024R161 153 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 CYTH3O43739 400 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 PPP1R11O60927 126 aaPredicted RBP11.57□□□□□ -0.56
CLN3-220ENST00000566040 PRMT2P55345 433 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 KIF22Q14807 665 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 C8orf34Q49A92 452 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 IFFO2Q5TF58 517 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 SAMD1Q6SPF0 538 aaPredicted RBP11.57□□□□□ -0.56
CLN3-220ENST00000566040 PLEKHH3Q7Z736 793 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 MTMR8Q96EF0 704 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 AGBL1Q96MI9 1066 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 TCEANC2Q96MN5 208 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 LRRC2Q9BYS8 371 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 RAVER2Q9HCJ3 691 aaKnown RBP11.57□□□□□ -0.56
CLN3-220ENST00000566040 GPCPD1Q9NPB8 672 aa11.57□□□□□ -0.56
CLN3-220ENST00000566040 PALM3A6NDB9 673 aaPredicted RBP11.56□□□□□ -0.56
CLN3-220ENST00000566040 SLC15A5A6NIM6 579 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 PRC1O43663 620 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 ADCY3O60266 1144 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 ADORA2AP29274 412 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 GRK4P32298 578 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 STAT3P40763 770 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 MAP2K5Q13163 448 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 GRM4Q14833 912 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 MUM1L1Q5H9M0 696 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 PPP4R3BQ5MIZ7 849 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 SYDE2Q5VT97 1194 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 SNRNP48Q6IEG0 339 aaKnown RBP11.56□□□□□ -0.56
CLN3-220ENST00000566040 KIAA1211Q6ZU35 1233 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 FAM160B2Q86V87 743 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 IQCA1Q86XH1 822 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 TRPV1Q8NER1 839 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 PXYLP1Q8TE99 480 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 IL17RAQ96F46 866 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 MYL10Q9BUA6 226 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 TEX13BQ9BXU2 312 aa11.56□□□□□ -0.56
CLN3-220ENST00000566040 DOCK5Q9H7D0 1870 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 OPLAHO14841 1288 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 INHAP05111 366 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 XRCC5P13010 732 aaKnown RBP11.55□□□□□ -0.56
CLN3-220ENST00000566040 CYP2B6P20813 491 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 OAZ1P54368 228 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 SOX10P56693 466 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 PLS1Q14651 629 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 CCDC96Q2M329 555 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 SLAIN1Q8ND83 568 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 CLEC4DQ8WXI8 215 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 COA7Q96BR5 231 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 APBA2Q99767 749 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 AGXT2Q9BYV1 514 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 UBA5Q9GZZ9 404 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 UNC93B1Q9H1C4 597 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 BRPF3Q9ULD4 1205 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 DDX49Q9Y6V7 483 aaKnown RBP11.55□□□□□ -0.56
CLN3-220ENST00000566040 WDR19Q8NEZ3 1342 aa11.55□□□□□ -0.56
CLN3-220ENST00000566040 NID2Q14112 1375 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 PDE4DIPQ5VU43 2346 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 IFIT3O14879 490 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms