RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 SNRNP48Q6IEG0 339 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 RIOX2Q8IUF8 465 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 CCDC136Q96JN2 1154 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 CRISPLD2Q9H0B8 497 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 RAVER2Q9HCJ3 691 aaKnown RBP16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 IL17RBQ9NRM6 502 aa16.12■□□□□ 0.17
VPS9D1-204ENST00000565023 ALPK3Q96L96 1907 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 HIP1O00291 1037 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 STRNO43815 780 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 SLC25A27O95847 323 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 GSPT1P15170 499 aaKnown RBP16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 SLC1A4P43007 532 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 KCTD2Q14681 263 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 CCDC96Q2M329 555 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 TTC22Q5TAA0 569 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 ANO1Q5XXA6 986 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 KCTD1Q719H9 257 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 UBE2Q1Q7Z7E8 422 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 TBC1D10CQ8IV04 446 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 PRPF38AQ8NAV1 312 aaKnown RBP16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 GMCL1P1Q8NEA9 526 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 REPS2Q8NFH8 660 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 FEM1BQ9UK73 627 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 ZNF214Q9UL59 606 aaPredicted RBP16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 ADAMTS5Q9UNA0 930 aa16.11■□□□□ 0.17
VPS9D1-204ENST00000565023 LAMA4Q16363 1823 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 H0YGN5 161 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 ORC4O43929 436 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 HOXC6P09630 235 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 SNAP25P60880 206 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 PRAMEF19Q5SWL8 479 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 MFSD6Q6ZSS7 791 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 NECAB2Q7Z6G3 386 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 NBPF3Q9H094 633 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 SLC5A4Q9NY91 659 aa16.1■□□□□ 0.17
VPS9D1-204ENST00000565023 ZNF213O14771 459 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 MYCNP04198 464 aaPredicted RBP16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 PPP4R3BQ5MIZ7 849 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 AKNAD1Q5T1N1 836 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 TRPV1Q8NER1 839 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 ZKSCAN3Q9BRR0 538 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 TEX13BQ9BXU2 312 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 HOMER2Q9NSB8 354 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 RIPK3Q9Y572 518 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 ZMYM6O95789 1325 aa16.09■□□□□ 0.17
VPS9D1-204ENST00000565023 STAT2P52630 851 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 CCDC174Q6PII3 467 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 DDX11Q96FC9 970 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 MAML3Q96JK9 1138 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 IL25Q9H293 177 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 C11orf49Q9H6J7 331 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 OGDHLQ9ULD0 1010 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 NEDD4P46934 1319 aa16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 FRMPD2Q68DX3 1309 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-204ENST00000565023 SMCHD1A6NHR9 2005 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 EVI5O60447 810 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 FGRP09769 529 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 CYBAP13498 195 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 COPB2P35606 906 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 OLFML2BQ68BL8 750 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 LHX8Q68G74 356 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 ABRAQ8N0Z2 381 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 ANKLE1Q8NAG6 615 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 STAG1Q8WVM7 1258 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 GMCL1Q96IK5 515 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 TMEM47Q9BQJ4 181 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 RNF41Q9H4P4 317 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 SLC38A10Q9HBR0 1119 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 GPCPD1Q9NPB8 672 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 PPP4R2Q9NY27 417 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 DDX20Q9UHI6 824 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 SYNPO2Q9UMS6 1093 aa16.07■□□□□ 0.16
VPS9D1-204ENST00000565023 MCM3APO60318 1980 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 TOP1P11387 765 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 TAL1P17542 331 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 MNX1P50219 401 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 TTBK2Q6IQ55 1244 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 RCSD1Q6JBY9 416 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 FAM160B2Q86V87 743 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 C7orf61Q8IZ16 206 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 CHURC1Q8WUH1 139 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 NR2E3Q9Y5X4 410 aa16.06■□□□□ 0.16
VPS9D1-204ENST00000565023 KDM4AO75164 1064 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 CAPN2P17655 700 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 SLC16A2P36021 539 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 IMMTQ16891 758 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 ZNF792Q3KQV3 632 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 ANKRD35Q8N283 1001 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 ESR2Q92731 530 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 AGBL1Q96MI9 1066 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 DSCC1Q9BVC3 393 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 PRR12Q9ULL5 1215 aa16.05■□□□□ 0.16
VPS9D1-204ENST00000565023 B4E1Z4 1266 aa16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 ALAS1P13196 640 aa16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 GJC2Q5T442 439 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 CHRDL2Q6WN34 429 aa16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 SKAP1Q86WV1 359 aa16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 DCAF4Q8WV16 495 aa16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 ZMYND8Q9ULU4 1186 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-204ENST00000565023 COLQQ9Y215 455 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms