RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ZNF236Q9UL36 1845 aa19.59■□□□□ 0.73
CLK3-207ENST00000562389 FRMPD2Q68DX3 1309 aaPredicted RBP19.58■□□□□ 0.73
CLK3-207ENST00000562389 ATP2A1O14983 1001 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 PRC1O43663 620 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 ZBED4O75132 1171 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 SLC25A27O95847 323 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 PLS1Q14651 629 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 WTAPQ15007 396 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 TMEM67Q5HYA8 995 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 GPATCH4Q5T3I0 446 aaKnown RBP19.58■□□□□ 0.72
CLK3-207ENST00000562389 PLEKHH3Q7Z736 793 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 RIOX2Q8IUF8 465 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 ABHD8Q96I13 439 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 TMEM87BQ96K49 555 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 NEK1Q96PY6 1258 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 USP26Q9BXU7 913 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 GJD2Q9UKL4 321 aa19.58■□□□□ 0.72
CLK3-207ENST00000562389 WDR19Q8NEZ3 1342 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 ERCC3P19447 782 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 COPB2P35606 906 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 STAT3P40763 770 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 FLT3LGP49771 235 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 OAZ1P54368 228 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 IRF5Q13568 498 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 COL9A3Q14050 684 aaPredicted RBP19.57■□□□□ 0.72
CLK3-207ENST00000562389 ADCK5Q3MIX3 580 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 TTBK2Q6IQ55 1244 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 RAET1EQ8TD07 263 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 SOCS4Q8WXH5 440 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 TEX13BQ9BXU2 312 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 MROH8Q9H579 483 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 CWC22Q9HCG8 908 aaKnown RBP19.57■□□□□ 0.72
CLK3-207ENST00000562389 PRR12Q9ULL5 1215 aa19.57■□□□□ 0.72
CLK3-207ENST00000562389 CTDP1Q9Y5B0 961 aaPredicted RBP19.57■□□□□ 0.72
CLK3-207ENST00000562389 SH2B2O14492 632 aaPredicted RBP19.56■□□□□ 0.72
CLK3-207ENST00000562389 EIF5BO60841 1220 aaKnown RBP19.56■□□□□ 0.72
CLK3-207ENST00000562389 ASPRV1Q53RT3 343 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 MORN1Q5T089 497 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 SYDE2Q5VT97 1194 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 NUDT12Q9BQG2 462 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 LY9Q9HBG7 655 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 SENP2Q9HC62 589 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 GPCPD1Q9NPB8 672 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 SNX14Q9Y5W7 946 aa19.56■□□□□ 0.72
CLK3-207ENST00000562389 HMGB1P09429 215 aaKnown RBP19.55■□□□□ 0.72
CLK3-207ENST00000562389 PTPREP23469 700 aa19.55■□□□□ 0.72
CLK3-207ENST00000562389 WDR78Q5VTH9 848 aa19.55■□□□□ 0.72
CLK3-207ENST00000562389 NCAPG2Q86XI2 1143 aa19.55■□□□□ 0.72
CLK3-207ENST00000562389 IVNS1ABPQ9Y6Y0 642 aa19.55■□□□□ 0.72
CLK3-207ENST00000562389 SLC15A5A6NIM6 579 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 STRNO43815 780 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 PARP1P09874 1014 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 SLC16A2P36021 539 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 LIFRP42702 1097 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 EXOSC10Q01780 885 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 GRB14Q14449 540 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 SNRNP48Q6IEG0 339 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 DHX32Q7L7V1 743 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 TMTC2Q8N394 836 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 SLAIN1Q8ND83 568 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 PXYLP1Q8TE99 480 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 USP6NLQ92738 828 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 ARMC5Q96C12 935 aa19.54■□□□□ 0.72
CLK3-207ENST00000562389 RANBP17Q9H2T7 1088 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 RAVER2Q9HCJ3 691 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 ZNFX1Q9P2E3 1918 aaKnown RBP19.54■□□□□ 0.72
CLK3-207ENST00000562389 ZNF536O15090 1300 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 GOLGA8HP0CJ92 632 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 RGS2P41220 211 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 TROAPQ12815 778 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 SLC9C1Q4G0N8 1177 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 CATIPQ7Z7H3 387 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 ABRAQ8N0Z2 381 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 CPXCR1Q8N123 301 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 GPHNQ9NQX3 736 aaPredicted RBP19.53■□□□□ 0.72
CLK3-207ENST00000562389 GTF3C3Q9Y5Q9 886 aa19.53■□□□□ 0.72
CLK3-207ENST00000562389 ADCY3O60266 1144 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 DDAH1O94760 285 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 XRCC5P13010 732 aaKnown RBP19.52■□□□□ 0.72
CLK3-207ENST00000562389 GRK4P32298 578 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 MAP2K5Q13163 448 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 GRM4Q14833 912 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.52■□□□□ 0.72
CLK3-207ENST00000562389 NBPF11Q86T75 865 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 JAKMIP1Q96N16 626 aaKnown RBP19.52■□□□□ 0.72
CLK3-207ENST00000562389 APBA2Q99767 749 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 LRRC2Q9BYS8 371 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 MAD2L2Q9UI95 211 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 RIPK3Q9Y572 518 aa19.52■□□□□ 0.72
CLK3-207ENST00000562389 PALM3A6NDB9 673 aaPredicted RBP19.51■□□□□ 0.71
CLK3-207ENST00000562389 CCDC69A6NI79 296 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 PSMA5P28066 241 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 SGMS1Q86VZ5 419 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 ZNF654Q8IZM8 581 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 MAP3K14Q99558 947 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 MYH6P13533 1939 aa19.51■□□□□ 0.71
CLK3-207ENST00000562389 PLXNA1Q9UIW2 1896 aa19.5■□□□□ 0.71
CLK3-207ENST00000562389 ICAM1P05362 532 aa19.5■□□□□ 0.71
CLK3-207ENST00000562389 HOXC6P09630 235 aa19.5■□□□□ 0.71
CLK3-207ENST00000562389 FCER1AP12319 257 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms