RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 NFAT5O94916 1531 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 A0A087WWV3 80 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 FGFR2P21802 821 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 HERC4Q5GLZ8 1057 aaPredicted RBP10.41□□□□□ -0.74
VPS39-205ENST00000562258 MYSM1Q5VVJ2 828 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 NEK8Q86SG6 692 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 NOSTRINQ8IVI9 506 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 FBXO18Q8NFZ0 1043 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 STAG1Q8WVM7 1258 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 FBXO28Q9NVF7 368 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 SMTNL1A8MU46 457 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 TNPO2O14787 897 aaKnown RBP10.41□□□□□ -0.74
VPS39-205ENST00000562258 HS2ST1Q7LGA3 356 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 NEDD1Q8NHV4 660 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 TTC14Q96N46 770 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 USP28Q96RU2 1077 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 RNF146Q9NTX7 359 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 BRPF3Q9ULD4 1205 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 ENTPD3O75355 529 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 MRE11P49959 708 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 KANK3Q6NY19 840 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 SV2BQ7L1I2 683 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 ADGRA1Q86SQ6 560 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 ANKRD13AQ8IZ07 590 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 PRPF38AQ8NAV1 312 aaKnown RBP10.41□□□□□ -0.74
VPS39-205ENST00000562258 ACER1Q8TDN7 264 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 SLF1Q9BQI6 1058 aa10.41□□□□□ -0.74
VPS39-205ENST00000562258 EPB41L4AQ9HCS5 686 aaPredicted RBP10.41□□□□□ -0.74
VPS39-205ENST00000562258 STAT3P40763 770 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 LIFRP42702 1097 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 RNF207Q6ZRF8 634 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 ZNF280CQ8ND82 737 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 TBCKQ8TEA7 893 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 EEF2KMTQ96G04 330 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 PPP1R16BQ96T49 567 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 ADD3Q9UEY8 706 aaKnown RBP10.4□□□□□ -0.74
VPS39-205ENST00000562258 NDUFB10O96000 172 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 PTGDRQ13258 359 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 DACT2Q5SW24 774 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 FKBP15Q5T1M5 1219 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 HAUS3Q68CZ6 603 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 STOX1Q6ZVD7 989 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 RMDN3Q96TC7 470 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 GBA2Q9HCG7 927 aaPredicted RBP10.4□□□□□ -0.74
VPS39-205ENST00000562258 KCNH3Q9ULD8 1083 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 DNM3Q9UQ16 869 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 XRN1Q8IZH2 1706 aaKnown RBP10.4□□□□□ -0.74
VPS39-205ENST00000562258 AK9Q5TCS8 1911 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 ECE1P42892 770 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 MOB2Q70IA6 237 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 LRRC27Q9C0I9 530 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 DDX25Q9UHL0 483 aaKnown RBP10.4□□□□□ -0.74
VPS39-205ENST00000562258 USP25Q9UHP3 1055 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 ADGRB2O60241 1585 aa10.4□□□□□ -0.74
VPS39-205ENST00000562258 N4BP3O15049 544 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 CTAGE5O15320 804 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 CYP2B6P20813 491 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 TDRD12Q587J7 1177 aaKnown RBP10.4□□□□□ -0.75
VPS39-205ENST00000562258 XKR9Q5GH70 373 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 RDH13Q8NBN7 331 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 NSUN7Q8NE18 718 aaKnown RBP10.4□□□□□ -0.75
VPS39-205ENST00000562258 CLIC6Q96NY7 704 aa10.4□□□□□ -0.75
VPS39-205ENST00000562258 RNF26Q9BY78 433 aaPredicted RBP10.4□□□□□ -0.75
VPS39-205ENST00000562258 TRIM6Q9C030 488 aaPredicted RBP10.4□□□□□ -0.75
VPS39-205ENST00000562258 FTOQ9C0B1 505 aaKnown RBP eCLIP10.4□□□□□ -0.75
VPS39-205ENST00000562258 MARK3P27448 753 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 CETN1Q12798 172 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 CEP135Q66GS9 1140 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 FAM160B2Q86V87 743 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 GPC2Q8N158 579 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 DNAJC25Q9H1X3 360 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 MTMR4Q9NYA4 1195 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 PSMA7O14818 248 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 IFNAR1P17181 557 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 RCSD1Q6JBY9 416 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 ZFPM1Q8IX07 1006 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 AP5M1Q9H0R1 490 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 DNA2P51530 1060 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 QRICH1Q2TAL8 776 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 NELFCDQ8IXH7 590 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 ZDHHC15Q96MV8 337 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 BLZF1Q9H2G9 400 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.39□□□□□ -0.752e-10■■■■■ 319.1
VPS39-205ENST00000562258 ZNF609O15014 1411 aa10.39□□□□□ -0.75
VPS39-205ENST00000562258 SHTN1A0MZ66 631 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 RASA1P20936 1047 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 LRCH2Q5VUJ6 765 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 CABP7Q86V35 215 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 MYCT1Q8N699 235 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 TRERF1Q96PN7 1200 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 PYM1Q9BRP8 204 aaKnown RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 ATRNO75882 1429 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 COG2Q14746 738 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 EP400NLQ6ZTU2 488 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 CERS5Q8N5B7 392 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 LEO1Q8WVC0 666 aaPredicted RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 IFT74Q96LB3 600 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 ZNF577Q9BSK1 485 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 SENP2Q9HC62 589 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms