RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PCDHA7Q9UN72 937 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 TMX2Q9Y320 296 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 BLIDQ8IZY5 108 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 GLIS2Q9BZE0 524 aaPredicted RBP24.43■■□□□ 1.5
CLN3-209ENST00000561689 PCDHA4Q9UN74 947 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 SLC39A14Q15043 492 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 KIAA1755Q5JYT7 1200 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 MARCKSP29966 332 aaPredicted RBP24.42■■□□□ 1.5
CLN3-209ENST00000561689 PTPAQ15257 358 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 ZYXQ15942 572 aaKnown RBP24.42■■□□□ 1.5
CLN3-209ENST00000561689 DPY19L2Q6NUT2 758 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 SYAP1Q96A49 352 aaPredicted RBP24.42■■□□□ 1.5
CLN3-209ENST00000561689 SYNPO2Q9UMS6 1093 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 FZD1Q9UP38 647 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 PCDHB6Q9Y5E3 794 aa24.42■■□□□ 1.5
CLN3-209ENST00000561689 BMP3P12645 472 aa24.41■■□□□ 1.5
CLN3-209ENST00000561689 PIK3AP1Q6ZUJ8 805 aa24.41■■□□□ 1.5
CLN3-209ENST00000561689 RASGRP4Q8TDF6 673 aa24.41■■□□□ 1.5
CLN3-209ENST00000561689 COA7Q96BR5 231 aa24.41■■□□□ 1.5
CLN3-209ENST00000561689 PNMA6FA0A0J9YX94 578 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 INPP5BP32019 993 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 GOPCQ9HD26 462 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 TMEM232C9JQI7 657 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 CTNND1O60716 968 aaKnown RBP24.4■■□□□ 1.5
CLN3-209ENST00000561689 PPP1R11O60927 126 aaPredicted RBP24.4■■□□□ 1.5
CLN3-209ENST00000561689 IKQ13123 557 aaPredicted RBP24.4■■□□□ 1.5
CLN3-209ENST00000561689 DCAF15Q66K64 600 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 CCDC12Q8WUD4 166 aaPredicted RBP24.4■■□□□ 1.5
CLN3-209ENST00000561689 ZMYND12Q9H0C1 365 aa24.4■■□□□ 1.5
CLN3-209ENST00000561689 SMCO2A6NFE2 343 aa24.39■■□□□ 1.49
CLN3-209ENST00000561689 CCAR1Q8IX12 1150 aaKnown RBP24.39■■□□□ 1.49
CLN3-209ENST00000561689 MTMR8Q96EF0 704 aa24.39■■□□□ 1.49
CLN3-209ENST00000561689 ZNF341Q9BYN7 854 aa24.39■■□□□ 1.49
CLN3-209ENST00000561689 SYCE3A1L190 88 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 M0R2N6 131 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 ZBTB5O15062 677 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 GALNT17Q6IS24 598 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 DLK2Q6UY11 383 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 DAGLBQ8NCG7 672 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 PCDHA6Q9UN73 950 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 PCDHA8Q9Y5H6 950 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 GRIN3BO60391 1043 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 CCDC183Q5T5S1 534 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 ADALQ6DHV7 355 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 FAM177A1Q8N128 213 aaPredicted RBP24.38■■□□□ 1.49
CLN3-209ENST00000561689 DACT1Q9NYF0 836 aa24.38■■□□□ 1.49
CLN3-209ENST00000561689 WNT7AO00755 349 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 NR1I2O75469 434 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 SNAP25P60880 206 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 FAM83BQ5T0W9 1011 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 HOOK2Q96ED9 719 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 GOLPH3LQ9H4A5 285 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 SH2D4AQ9H788 454 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 VCPKMTQ9H867 229 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 C6orf50Q9HD87 102 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 NOL7Q9UMY1 257 aaKnown RBP24.37■■□□□ 1.49
CLN3-209ENST00000561689 PPP2R3BQ9Y5P8 575 aa24.37■■□□□ 1.49
CLN3-209ENST00000561689 TRIM75PA6NK02 468 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 hCG_1984214I3L0E3 225 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 QRICH1Q2TAL8 776 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 ZNF713Q8N859 430 aaPredicted RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 ZKSCAN4Q969J2 545 aaPredicted RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 WRNIP1Q96S55 665 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 FEZ1Q99689 392 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 PITPNM2Q9BZ72 1349 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 PPP6R2O75170 966 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 GNA11P29992 359 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 CDC37Q16543 378 aaPredicted RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 AXDND1Q5T1B0 1012 aaPredicted RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 SYDE2Q5VT97 1194 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 GAS2L3Q86XJ1 694 aa24.36■■□□□ 1.49
CLN3-209ENST00000561689 DCPSQ96C86 337 aaKnown RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 L3MBTL3Q96JM7 780 aaPredicted RBP24.36■■□□□ 1.49
CLN3-209ENST00000561689 ZNF445P59923 1031 aa24.35■■□□□ 1.49
CLN3-209ENST00000561689 JMYQ8N9B5 988 aa24.35■■□□□ 1.49
CLN3-209ENST00000561689 FSIP1Q8NA03 581 aa24.35■■□□□ 1.49
CLN3-209ENST00000561689 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.35■■□□□ 1.49
CLN3-209ENST00000561689 ZNF112Q9UJU3 913 aa24.35■■□□□ 1.49
CLN3-209ENST00000561689 CCDC194A0A1B0GVG4 234 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 A0A1W2PQ27 194 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 A0A1W2PQ64 194 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 A0A1W2PQD8 194 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 PRKG1Q13976 671 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 ZNF174Q15697 407 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 TTC38Q5R3I4 469 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 CLIC6Q96NY7 704 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 MRVI1Q9Y6F6 885 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 SUPT20HL1Q3ZLR7 823 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 BTNL9Q6UXG8 535 aa24.34■■□□□ 1.49
CLN3-209ENST00000561689 MRPS27Q92552 414 aaKnown RBP24.34■■□□□ 1.49
CLN3-209ENST00000561689 A0A1B0GVL5 298 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 ESYT2A0FGR8 921 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 GLTPD2A6NH11 291 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 ADM5C9JUS6 153 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 STAT2P52630 851 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 SULF1Q8IWU6 871 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 SCYL3Q8IZE3 742 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 GINM1Q9NU53 330 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 CEP131Q9UPN4 1083 aa24.33■■□□□ 1.49
CLN3-209ENST00000561689 SSC5DA1L4H1 1573 aa24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms