RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KCTD1Q719H9 257 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 DHX32Q7L7V1 743 aaKnown RBP15.21■□□□□ 0.03
NEDD8-208ENST00000560427 TNS4Q8IZW8 715 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 MROH8Q9H579 483 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 ZNF214Q9UL59 606 aaPredicted RBP15.21■□□□□ 0.03
NEDD8-208ENST00000560427 CTDP1Q9Y5B0 961 aaPredicted RBP15.21■□□□□ 0.03
NEDD8-208ENST00000560427 SNX14Q9Y5W7 946 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 SH2B2O14492 632 aaPredicted RBP15.2■□□□□ 0.02
NEDD8-208ENST00000560427 DDAH1O94760 285 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 PARP1P09874 1014 aaKnown RBP15.2■□□□□ 0.02
NEDD8-208ENST00000560427 STAT3P40763 770 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 IRF5Q13568 498 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 CHST3Q7LGC8 479 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 GPR142Q7Z601 462 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 PLEKHH3Q7Z736 793 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 CATIPQ7Z7H3 387 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 RIOX2Q8IUF8 465 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 MAP3K14Q99558 947 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 MOV10L1Q9BXT6 1211 aaKnown RBP15.2■□□□□ 0.02
NEDD8-208ENST00000560427 PORCNQ9H237 461 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 LY9Q9HBG7 655 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 CWC22Q9HCG8 908 aaKnown RBP15.2■□□□□ 0.02
NEDD8-208ENST00000560427 PRR12Q9ULL5 1215 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 MTMR7Q9Y216 660 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 MGAMO43451 1857 aa15.2■□□□□ 0.02
NEDD8-208ENST00000560427 STRNO43815 780 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 ANAPC15P60006 121 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 PRKCZQ05513 592 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 PLS1Q14651 629 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 ADCK5Q3MIX3 580 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 SYDE2Q5VT97 1194 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 BLOC1S2Q6QNY1 142 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 SAMD1Q6SPF0 538 aaPredicted RBP15.19■□□□□ 0.02
NEDD8-208ENST00000560427 RASGRP2Q7LDG7 609 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 SGMS1Q86VZ5 419 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 ABRAQ8N0Z2 381 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 RANBP17Q9H2T7 1088 aaKnown RBP15.19■□□□□ 0.02
NEDD8-208ENST00000560427 IVNS1ABPQ9Y6Y0 642 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 ZNF236Q9UL36 1845 aa15.19■□□□□ 0.02
NEDD8-208ENST00000560427 FRMPD2Q68DX3 1309 aaPredicted RBP15.18■□□□□ 0.02
NEDD8-208ENST00000560427 ZSWIM8A7E2V4 1837 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 SLC15A5A6NIM6 579 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 CALM1P0DP23 149 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 CALM2P0DP24 149 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 CALM3P0DP25 149 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 ERCC3P19447 782 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 EXOSC10Q01780 885 aaKnown RBP15.18■□□□□ 0.02
NEDD8-208ENST00000560427 TROAPQ12815 778 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 SNRNP48Q6IEG0 339 aaKnown RBP15.18■□□□□ 0.02
NEDD8-208ENST00000560427 RAET1EQ8TD07 263 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 JAKMIP1Q96N16 626 aaKnown RBP15.18■□□□□ 0.02
NEDD8-208ENST00000560427 NUDT12Q9BQG2 462 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 TM6SF1Q9BZW5 370 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 FBXO40Q9UH90 709 aa15.18■□□□□ 0.02
NEDD8-208ENST00000560427 CCDC69A6NI79 296 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 PEX10O60683 326 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 XRCC5P13010 732 aaKnown RBP15.17■□□□□ 0.02
NEDD8-208ENST00000560427 PTPREP23469 700 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 RGS2P41220 211 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 FLT3LGP49771 235 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 RCAN1P53805 252 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 GRB14Q14449 540 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 GRM4Q14833 912 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 TKFCQ3LXA3 575 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 C8orf34Q49A92 452 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 TTBK2Q6IQ55 1244 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 NFXL1Q6ZNB6 911 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.17■□□□□ 0.02
NEDD8-208ENST00000560427 NCAPG2Q86XI2 1143 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 TRMT44Q8IYL2 757 aaKnown RBP15.17■□□□□ 0.02
NEDD8-208ENST00000560427 ZNF654Q8IZM8 581 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 FBXL16Q8N461 479 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 SLAIN1Q8ND83 568 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 PXYLP1Q8TE99 480 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 IL17RAQ96F46 866 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 GPCPD1Q9NPB8 672 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 GJD2Q9UKL4 321 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 HPS5Q9UPZ3 1129 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 PTCH2Q9Y6C5 1203 aa15.17■□□□□ 0.02
NEDD8-208ENST00000560427 PALM3A6NDB9 673 aaPredicted RBP15.16■□□□□ 0.02
NEDD8-208ENST00000560427 ICAM1P05362 532 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 RPS6KB1P23443 525 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 KIF5BP33176 963 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 SLC16A2P36021 539 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 MORN1Q5T089 497 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 WDR78Q5VTH9 848 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 CPXCR1Q8N123 301 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 CHST13Q8NET6 341 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 CTCFLQ8NI51 663 aaPredicted RBP15.16■□□□□ 0.02
NEDD8-208ENST00000560427 APBA2Q99767 749 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 SENP2Q9HC62 589 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 MAD2L2Q9UI95 211 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 SLC12A7Q9Y666 1083 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 ZNF536O15090 1300 aa15.16■□□□□ 0.02
NEDD8-208ENST00000560427 COL11A1P12107 1806 aaPredicted RBP15.15■□□□□ 0.02
NEDD8-208ENST00000560427 ECM2O94769 699 aaPredicted RBP15.15■□□□□ 0.02
NEDD8-208ENST00000560427 HOXC6P09630 235 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 GOLGA8HP0CJ92 632 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 FCER1AP12319 257 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 CASTP20810 708 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms