RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 USP14P54578 494 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 ST3GAL1Q11201 340 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 PPIL2Q13356 520 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 TTLL12Q14166 644 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 SAFBQ15424 915 aaKnown RBP eCLIP7.44□□□□□ -1.22
SPG11-221ENST00000560299 NTRK3Q16288 839 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 CCDC96Q2M329 555 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 SLFN13Q68D06 897 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 TMTC3Q6ZXV5 915 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 RASAL3Q86YV0 1011 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 FAM177A1Q8N128 213 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 LRRC47Q8N1G4 583 aaKnown RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 CCDC82Q8N4S0 544 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 GMCL1P1Q8NEA9 526 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 SLC10A4Q96EP9 437 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 GBP4Q96PP9 640 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 FEZ1Q99689 392 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 ALG1Q9BT22 464 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 FAM217BQ9NTX9 383 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 SEC63Q9UGP8 760 aaKnown RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 MAD2L2Q9UI95 211 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 TMX2Q9Y320 296 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 V9GY48 417 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 GREB1LQ9C091 1923 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 MYH6P13533 1939 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 C19orf81C9J6K1 198 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 USP17L10C9JJH3 530 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 F5H6K3 240 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 GOLGA6L22H0YM25 854 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 BRD1O95696 1058 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 SLURP2P0DP57 97 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 SNHG28P0DPA3 235 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 BMP3P12645 472 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 GUCY1A2P33402 732 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 GTF2A2P52657 109 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 KLRC3Q07444 240 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 ZNF543Q08ER8 600 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 TRAF1Q13077 416 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 IKQ13123 557 aaPredicted RBP7.43□□□□□ -1.22
SPG11-221ENST00000560299 GNL2Q13823 731 aaKnown RBP7.43□□□□□ -1.22
SPG11-221ENST00000560299 VGLL4Q14135 290 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 PRAMEF18Q5VWM3 479 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 OTUD7BQ6GQQ9 843 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 USP17L2Q6R6M4 530 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 CCDC12Q8WUD4 166 aaPredicted RBP7.43□□□□□ -1.22
SPG11-221ENST00000560299 CHURC1Q8WUH1 139 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 LPAR1Q92633 364 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 PHKBQ93100 1093 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 RRP36Q96EU6 259 aaKnown RBP7.43□□□□□ -1.22
SPG11-221ENST00000560299 GMCL1Q96IK5 515 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 WDR18Q9BV38 432 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 SPZ1Q9BXG8 430 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 ZSCAN16Q9H4T2 348 aaPredicted RBP7.43□□□□□ -1.22
SPG11-221ENST00000560299 BRMS1Q9HCU9 246 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 PRDM10Q9NQV6 1147 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 PCDHB13Q9Y5F0 798 aa7.43□□□□□ -1.22
SPG11-221ENST00000560299 UBE2Q2LH0YL09 131 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 hCG_1984214I3L0E3 225 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 PLEKHA8P1O95397 391 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 NDUFB10O96000 172 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SCG2P13521 617 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 FDPSP14324 419 aaKnown RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 PTPRAP18433 802 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 PTMSP20962 102 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 CALML3P27482 149 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 INPP5BP32019 993 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 FMR1Q06787 632 aaKnown RBP eCLIP7.42□□□□□ -1.22
SPG11-221ENST00000560299 PRKG1Q13976 671 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 RRP1BQ14684 758 aaKnown RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 PFKFB3Q16875 520 aaPredicted RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 CSPP1Q1MSJ5 1256 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SH3D19Q5HYK7 790 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 MCTP1Q6DN14 999 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 NBPF11Q86T75 865 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 FAM160B2Q86V87 743 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 CLEC10AQ8IUN9 316 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SIAH1Q8IUQ4 282 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 CMTR1Q8N1G2 835 aaKnown RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 STAG2Q8N3U4 1231 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SRBD1Q8N5C6 995 aaKnown RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 ZNF713Q8N859 430 aaPredicted RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 ZNF280CQ8ND82 737 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 CCDC148Q8NFR7 591 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 FBXO18Q8NFZ0 1043 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 WNK4Q96J92 1243 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 MS4A4AQ96JQ5 239 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 KIAA1683Q9H0B3 1180 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 VCPKMTQ9H867 229 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 ZNF408Q9H9D4 720 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 GPCPD1Q9NPB8 672 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SH3GLB2Q9NR46 395 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 TMOD4Q9NZQ9 345 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 SNCAIPQ9Y6H5 919 aa7.42□□□□□ -1.22
SPG11-221ENST00000560299 FRMPD2Q68DX3 1309 aaPredicted RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 BAZ2BQ9UIF8 2168 aaKnown RBP7.42□□□□□ -1.22
SPG11-221ENST00000560299 ATAD5Q96QE3 1844 aa7.41□□□□□ -1.22
SPG11-221ENST00000560299 A0A1W2PRG0 241 aa7.41□□□□□ -1.22
SPG11-221ENST00000560299 TMEM232C9JQI7 657 aa7.41□□□□□ -1.22
SPG11-221ENST00000560299 SNPHO15079 494 aa7.41□□□□□ -1.22
SPG11-221ENST00000560299 WDR46O15213 610 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms