RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SLC35G1Q2M3R5 365 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 NUP133Q8WUM0 1156 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 KIFC2Q96AC6 838 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 PAGR1Q9BTK6 254 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 MORF4L1Q9UBU8 362 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 PALM3A6NDB9 673 aaPredicted RBP25.43■■□□□ 1.66
SNX1-210ENST00000560260 PARP1P09874 1014 aaKnown RBP25.43■■□□□ 1.66
SNX1-210ENST00000560260 FGD1P98174 961 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 FAM110CQ1W6H9 321 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 ASPRV1Q53RT3 343 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 FAM160B2Q86V87 743 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 MICU3Q86XE3 530 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 HOXC10Q9NYD6 342 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 PRR12Q9ULL5 1215 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 SLC12A7Q9Y666 1083 aa25.43■■□□□ 1.66
SNX1-210ENST00000560260 VWA5AO00534 786 aa25.42■■□□□ 1.66
SNX1-210ENST00000560260 IKQ13123 557 aaPredicted RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 NOM1Q5C9Z4 860 aaKnown RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 GPATCH4Q5T3I0 446 aaKnown RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 SYDE2Q5VT97 1194 aa25.42■■□□□ 1.66
SNX1-210ENST00000560260 CCDC144CPQ8IYA2 1237 aa25.42■■□□□ 1.66
SNX1-210ENST00000560260 PRPF38AQ8NAV1 312 aaKnown RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 GTF3C2Q8WUA4 911 aaPredicted RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 ZNF296Q8WUU4 475 aaPredicted RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 LARP6Q9BRS8 491 aaKnown RBP25.42■■□□□ 1.66
SNX1-210ENST00000560260 UBA5Q9GZZ9 404 aa25.42■■□□□ 1.66
SNX1-210ENST00000560260 SNAP25P60880 206 aa25.41■■□□□ 1.66
SNX1-210ENST00000560260 TMEM132BQ14DG7 1078 aa25.41■■□□□ 1.66
SNX1-210ENST00000560260 Q3C1V9 767 aa25.41■■□□□ 1.66
SNX1-210ENST00000560260 CHURC1Q8WUH1 139 aa25.41■■□□□ 1.66
SNX1-210ENST00000560260 RABGAP1Q9Y3P9 1069 aa25.41■■□□□ 1.66
SNX1-210ENST00000560260 CTGFP29279 349 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 CTCFP49711 727 aaPredicted RBP25.4■■□□□ 1.66
SNX1-210ENST00000560260 LBX1P52954 281 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 AK2P54819 239 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 EVCP57679 992 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 ERVK-9P63128 1117 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 ERVK-24P63145 666 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 NBPF11Q86T75 865 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 MAP3K14Q99558 947 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 SLC38A10Q9HBR0 1119 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 HPS5Q9UPZ3 1129 aa25.4■■□□□ 1.66
SNX1-210ENST00000560260 NID2Q14112 1375 aa25.39■■□□□ 1.66
SNX1-210ENST00000560260 GOLGA8BA8MQT2 603 aa25.39■■□□□ 1.66
SNX1-210ENST00000560260 ZBTB43O43298 467 aa25.39■■□□□ 1.66
SNX1-210ENST00000560260 NEK4P51957 841 aa25.39■■□□□ 1.66
SNX1-210ENST00000560260 ARHGAP39Q9C0H5 1083 aa25.39■■□□□ 1.66
SNX1-210ENST00000560260 ALDH8A1Q9H2A2 487 aaPredicted RBP25.39■■□□□ 1.66
SNX1-210ENST00000560260 ZNF214Q9UL59 606 aaPredicted RBP25.39■■□□□ 1.66
SNX1-210ENST00000560260 KLRF2D3W0D1 207 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 ECM2O94769 699 aaPredicted RBP25.38■■□□□ 1.65
SNX1-210ENST00000560260 PLEKHA8P1O95397 391 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 TAL1P17542 331 aaPredicted RBP25.38■■□□□ 1.65
SNX1-210ENST00000560260 SP3Q02447 781 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 MB21D1Q8N884 522 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 PORCNQ9H237 461 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 RANBP17Q9H2T7 1088 aaKnown RBP25.38■■□□□ 1.65
SNX1-210ENST00000560260 FAM217BQ9NTX9 383 aaPredicted RBP25.38■■□□□ 1.65
SNX1-210ENST00000560260 ZNF536O15090 1300 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 CASP8AP2Q9UKL3 1982 aa25.38■■□□□ 1.65
SNX1-210ENST00000560260 GOLGA8AA7E2F4 631 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 FKTNO75072 461 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CALM1P0DP23 149 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CALM2P0DP24 149 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CALM3P0DP25 149 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 LACTBP83111 547 aaPredicted RBP25.37■■□□□ 1.65
SNX1-210ENST00000560260 FANCBQ8NB91 859 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 GPRC5AQ8NFJ5 357 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CTCFLQ8NI51 663 aaPredicted RBP25.37■■□□□ 1.65
SNX1-210ENST00000560260 CD99L2Q8TCZ2 262 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 SPATC1LQ9H0A9 340 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 NAP1L2Q9ULW6 460 aaPredicted RBP25.37■■□□□ 1.65
SNX1-210ENST00000560260 MGAMO43451 1857 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CYTH3O43739 400 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 CDC27P30260 824 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 SYNE3Q6ZMZ3 975 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 ADGRF4Q8IZF3 695 aa25.37■■□□□ 1.65
SNX1-210ENST00000560260 MOV10L1Q9BXT6 1211 aaKnown RBP25.37■■□□□ 1.65
SNX1-210ENST00000560260 RAVER2Q9HCJ3 691 aaKnown RBP25.37■■□□□ 1.65
SNX1-210ENST00000560260 ZBED4O75132 1171 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 PDIA3P30101 505 aaKnown RBP25.36■■□□□ 1.65
SNX1-210ENST00000560260 RCAN1P53805 252 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 RTN1Q16799 776 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 CCDC174Q6PII3 467 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 TMTC3Q6ZXV5 915 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 CMTR1Q8N1G2 835 aaKnown RBP25.36■■□□□ 1.65
SNX1-210ENST00000560260 SRBD1Q8N5C6 995 aaKnown RBP25.36■■□□□ 1.65
SNX1-210ENST00000560260 JMJD4Q9H9V9 463 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 TPCN1Q9ULQ1 816 aa25.36■■□□□ 1.65
SNX1-210ENST00000560260 LARGE1O95461 756 aa25.35■■□□□ 1.65
SNX1-210ENST00000560260 RABEP1Q15276 862 aa25.35■■□□□ 1.65
SNX1-210ENST00000560260 NOL8Q76FK4 1167 aaKnown RBP25.35■■□□□ 1.65
SNX1-210ENST00000560260 CPXCR1Q8N123 301 aa25.35■■□□□ 1.65
SNX1-210ENST00000560260 RIOX1Q9H6W3 641 aa25.35■■□□□ 1.65
SNX1-210ENST00000560260 EFCC1Q9HA90 598 aa25.35■■□□□ 1.65
SNX1-210ENST00000560260 ATP2A1O14983 1001 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 KIF5BP33176 963 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 METAP2P50579 478 aaKnown RBP eCLIP25.34■■□□□ 1.65
SNX1-210ENST00000560260 PLS1Q14651 629 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 CDC37Q16543 378 aaPredicted RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms