RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 USP40Q9NVE5 1235 aa6.22□□□□□ -1.41
SPG11-220ENST00000559933 SERPINA10Q9UK55 444 aa6.22□□□□□ -1.41
SPG11-220ENST00000559933 SNX14Q9Y5W7 946 aa6.22□□□□□ -1.41
SPG11-220ENST00000559933 NEDD4P46934 1319 aa6.22□□□□□ -1.41
SPG11-220ENST00000559933 MYH1P12882 1939 aa6.21□□□□□ -1.41
SPG11-220ENST00000559933 CNTNAP1P78357 1384 aa6.21□□□□□ -1.41
SPG11-220ENST00000559933 RPAP1Q9BWH6 1393 aaPredicted RBP6.21□□□□□ -1.41
SPG11-220ENST00000559933 TRAK2O60296 914 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GRIN3BO60391 1043 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 PRDM1O75626 825 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 REC8O95072 547 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 FGAP02671 866 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 HSPA4P34932 840 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 USP5P45974 858 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 HIRAP54198 1017 aaPredicted RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 POU4F2Q12837 409 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 DLGAP5Q15398 846 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 SHROOM1Q2M3G4 852 aaPredicted RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 LRRFIP1Q32MZ4 808 aaKnown RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 OXLD1Q5BKU9 147 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 CTR9Q6PD62 1173 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 KIAA1211Q6ZU35 1233 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GPC2Q8N158 579 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GPR161Q8N6U8 529 aaKnown RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 SLC44A5Q8NCS7 719 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 MAP4K1Q92918 833 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 DYNLL2Q96FJ2 89 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GMCL1Q96IK5 515 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GAS2L1Q99501 681 aaPredicted RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 KIF2CQ99661 725 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 DSCC1Q9BVC3 393 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 CRNKL1Q9BZJ0 848 aaKnown RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 NAPBQ9H115 298 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 VEZTQ9HBM0 779 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 DCP1AQ9NPI6 582 aaPredicted RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 RAB6BQ9NRW1 208 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 MCM9Q9NXL9 1143 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 GPRC5DQ9NZD1 345 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 ZNF70Q9UC06 446 aaPredicted RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 CNOT7Q9UIV1 285 aaKnown RBP6.21□□□□□ -1.42
SPG11-220ENST00000559933 SUGT1Q9Y2Z0 365 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 MYO3BQ8WXR4 1341 aa6.21□□□□□ -1.42
SPG11-220ENST00000559933 DDTLA6NHG4 134 aaPredicted RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 MINDY4BA8MYZ0 360 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 PATL2C9JE40 543 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 WNT10BO00744 389 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 DTNBO60941 627 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 LDHCP07864 332 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 PLCD1P51178 756 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 ZNF280AP59817 542 aaPredicted RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 NECTIN1Q15223 517 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 GNASQ5JWF2 1037 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 PRAMEF18Q5VWM3 479 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 TMEM214Q6NUQ4 689 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 HHIPL2Q6UWX4 724 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 NOL8Q76FK4 1167 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 CHST3Q7LGC8 479 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 TAS1R3Q7RTX0 852 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 ZBED3Q96IU2 234 aaPredicted RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 JAKMIP1Q96N16 626 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 NOL10Q9BSC4 688 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 LRRC2Q9BYS8 371 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 UPF3BQ9BZI7 483 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 GRIP2Q9C0E4 1043 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 TMEM39BQ9GZU3 492 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 OSBPL5Q9H0X9 879 aaPredicted RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 TIMMDC1Q9NPL8 285 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 GGA3Q9NZ52 723 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 MKRN1Q9UHC7 482 aaKnown RBP6.2□□□□□ -1.42
SPG11-220ENST00000559933 HACL1Q9UJ83 578 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 HDAC9Q9UKV0 1011 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 FZD1Q9UP38 647 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 DYRK1BQ9Y463 629 aa6.2□□□□□ -1.42
SPG11-220ENST00000559933 WDR90Q96KV7 1748 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 SSC5DA1L4H1 1573 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 USP17L12C9JPN9 530 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 ADM5C9JUS6 153 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 USP17L21D6R901 530 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 BAG3O95817 575 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 GNAT2P19087 354 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 RPS12P25398 132 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 RBM25P49756 843 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 FMR1Q06787 632 aaKnown RBP eCLIP6.19□□□□□ -1.42
SPG11-220ENST00000559933 PPARAQ07869 468 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 MAP7D1Q3KQU3 841 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 WDR44Q5JSH3 913 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 RRP12Q5JTH9 1297 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 ANGEL2Q5VTE6 544 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 CLEC10AQ8IUN9 316 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 TRIM22Q8IYM9 498 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 OGFOD1Q8N543 542 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 TRERF1Q96PN7 1200 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 ZSCAN10Q96SZ4 725 aaPredicted RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 DNAJC18Q9H819 358 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 UPF2Q9HAU5 1272 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 NMRK2Q9NPI5 230 aa6.19□□□□□ -1.42
SPG11-220ENST00000559933 RBM19Q9Y4C8 960 aaKnown RBP6.19□□□□□ -1.42
SPG11-220ENST00000559933 GLTPD2A6NH11 291 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 SPATA31C2B4DYI2 1134 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms