RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 CEP135Q66GS9 1140 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 HEATR3Q7Z4Q2 680 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 NEDD1Q8NHV4 660 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 ZNF287Q9HBT7 754 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 PCDHA6Q9UN73 950 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 TTF2Q9UNY4 1162 aaKnown RBP12.56□□□□□ -0.4
SPG11-217ENST00000559511 PCDHA8Q9Y5H6 950 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 G3V3G9 751 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 GOLGA8FQ08AF8 430 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 GOLGA8DPQ0D2H9 430 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 PTPN14Q15678 1187 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 DCAF8Q5TAQ9 597 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 PDXDC2PQ6P474 469 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 CCDC34Q96HJ3 373 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 DBNDD1Q9H9R9 158 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 KCNQ5Q9NR82 932 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 SAMSN1Q9NSI8 373 aaKnown RBP12.56□□□□□ -0.4
SPG11-217ENST00000559511 BARHL2Q9NY43 387 aa12.56□□□□□ -0.4
SPG11-217ENST00000559511 KLRF2D3W0D1 207 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 CTIFO43310 598 aaKnown RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 ERCC5P28715 1186 aaPredicted RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 SMYD4Q8IYR2 804 aaPredicted RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 CEP95Q96GE4 821 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 MTRQ99707 1265 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 PDGFDQ9GZP0 370 aaPredicted RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 ZNF219Q9P2Y4 722 aaPredicted RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 SIPA1L1O43166 1804 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 TOP1P11387 765 aaKnown RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 CDC25AP30304 524 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 SCNN1DP51172 638 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 CUL4BQ13620 913 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 DHX8Q14562 1220 aaKnown RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 ARL6IP4Q66PJ3 421 aaKnown RBP12.55□□□□□ -0.4
SPG11-217ENST00000559511 USP17L2Q6R6M4 530 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 PODNQ7Z5L7 613 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 IQUBQ8NA54 791 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 DAGLBQ8NCG7 672 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 CCDC148Q8NFR7 591 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 C7orf43Q8WVR3 580 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 ZNF592Q92610 1267 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 GSDMAQ96QA5 445 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 BLZF1Q9H2G9 400 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 PDCL3Q9H2J4 239 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 PAXBP1Q9Y5B6 917 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 MYH4Q9Y623 1939 aa12.55□□□□□ -0.4
SPG11-217ENST00000559511 CCDC194A0A1B0GVG4 234 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 PPP1R3GB7ZBB8 358 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 PARP1P09874 1014 aaKnown RBP12.54□□□□□ -0.4
SPG11-217ENST00000559511 CDK11BP21127 795 aaKnown RBP12.54□□□□□ -0.4
SPG11-217ENST00000559511 KCNJ6P48051 423 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 INF2Q27J81 1249 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 KLHL10Q6JEL2 608 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 ILDR2Q71H61 639 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 CNKSR1Q969H4 720 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 PPP1R13BQ96KQ4 1090 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 LZTS2Q9BRK4 669 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 SPZ1Q9BXG8 430 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 TMEM60Q9H2L4 133 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 TMX1Q9H3N1 280 aa12.54□□□□□ -0.4
SPG11-217ENST00000559511 DDX4Q9NQI0 724 aaKnown RBP12.54□□□□□ -0.4
SPG11-217ENST00000559511 SYNRGQ9UMZ2 1314 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 GREB1LQ9C091 1923 aaPredicted RBP12.53□□□□□ -0.4
SPG11-217ENST00000559511 LONP1P36776 959 aaKnown RBP12.53□□□□□ -0.4
SPG11-217ENST00000559511 NOVP48745 357 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 STX17P56962 302 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 TBX2Q13207 712 aaPredicted RBP12.53□□□□□ -0.4
SPG11-217ENST00000559511 PICALMQ13492 652 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 GALNT17Q6IS24 598 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 HHIPL2Q6UWX4 724 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 PSDA5PKW4 1024 aaPredicted RBP12.53□□□□□ -0.4
SPG11-217ENST00000559511 APTXQ7Z2E3 356 aaKnown RBP12.53□□□□□ -0.4
SPG11-217ENST00000559511 HOMER1Q86YM7 354 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 USP40Q9NVE5 1235 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 KIF13BQ9NQT8 1826 aa12.53□□□□□ -0.4
SPG11-217ENST00000559511 PP2D1A8MPX8 630 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 USP17L5A8MUK1 530 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 ECE2O60344 883 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 KARSQ15046 597 aaKnown RBP12.52□□□□□ -0.4
SPG11-217ENST00000559511 CT47A1Q5JQC4 288 aaPredicted RBP12.52□□□□□ -0.4
SPG11-217ENST00000559511 SPATA1Q5VX52 437 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 APOBEC3HQ6NTF7 200 aaKnown RBP12.52□□□□□ -0.4
SPG11-217ENST00000559511 CDC42EP5Q6NZY7 148 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 TMEM139Q8IV31 216 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 CCDC112Q8NEF3 446 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 TEKT1Q969V4 418 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 ZMYND12Q9H0C1 365 aa12.52□□□□□ -0.4
SPG11-217ENST00000559511 PLIN4Q96Q06 1357 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 A0A1B0GTH6 734 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 GTPBP6O43824 516 aaPredicted RBP12.52□□□□□ -0.41
SPG11-217ENST00000559511 NRDCO43847 1150 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 NAPAP54920 295 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 GABPAQ06546 454 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 NR1I3Q14994 352 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 DACT2Q5SW24 774 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 STRIP1Q5VSL9 837 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 DEFB132Q7Z7B7 95 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 MAP7D2Q96T17 732 aa12.52□□□□□ -0.41
SPG11-217ENST00000559511 PYM1Q9BRP8 204 aaKnown RBP12.52□□□□□ -0.41
SPG11-217ENST00000559511 C10orf71Q711Q0 1435 aa12.51□□□□□ -0.41
SPG11-217ENST00000559511 COBLO75128 1261 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms