RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 OPLAHO14841 1288 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 SUPT3HO75486 399 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 LSP1P33241 339 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 GEMIN4P57678 1058 aaKnown RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 USP46P62068 366 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 GPSM2P81274 684 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 PDE1BQ01064 536 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 POU5F1Q01860 360 aaKnown RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 ZNF268Q14587 947 aaPredicted RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 ANO7Q6IWH7 933 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 ARHGEF25Q86VW2 580 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 NLRP14Q86W24 1093 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 EHBP1Q8NDI1 1231 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 MYCBPAPQ8TBZ2 947 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 NEK1Q96PY6 1258 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 OSBPL7Q9BZF2 842 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 NDST4Q9H3R1 872 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 RMND1Q9NWS8 449 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 DACT1Q9NYF0 836 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 CDC25CP30307 473 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 ATICP31939 592 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 MTTPP55157 894 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 KLC1Q07866 573 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 CAMK4Q16566 473 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 PTGISQ16647 500 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 IFI16Q16666 785 aaKnown RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 ANKRD20A2Q5SQ80 823 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 ANKRD20A1Q5TYW2 823 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 ANKRD20A3Q5VUR7 823 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 CCSAPQ6IQ19 270 aaPredicted RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 KDM7AQ6ZMT4 941 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 C3orf62Q6ZUJ4 267 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 ITPRIPQ8IWB1 547 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 DHX40Q8IX18 779 aaKnown RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 PPP1R14CQ8TAE6 165 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 IFT81Q8WYA0 676 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 SPATA32Q96LK8 384 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 CCT8L2Q96SF2 557 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 CENPOQ9BU64 300 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 SIL1Q9H173 461 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 DCTPP1Q9H773 170 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 TBCCD1Q9NVR7 557 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 KIAA1522Q9P206 1035 aaPredicted RBP9.37□□□□□ -0.91
USP3-211ENST00000559257 IKBKGQ9Y6K9 419 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 TTC21AQ8NDW8 1320 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 MED14O60244 1454 aa9.37□□□□□ -0.91
USP3-211ENST00000559257 IQCA1LA6NCM1 817 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 TTC34A8MYJ7 566 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CYTH3O43739 400 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 PFKFB2O60825 505 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CLASP2O75122 1294 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 HNRNPCP07910 306 aaKnown RBP eCLIP9.36□□□□□ -0.913e-6■■□□□ 11.7
USP3-211ENST00000559257 TGFB3P10600 412 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 SP100P23497 879 aaPredicted RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 VARSP26640 1264 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 KRT85P78386 507 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 TMF1P82094 1093 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 ITIH3Q06033 890 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP3-211ENST00000559257 BOLA3Q53S33 107 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 STKLD1Q8NE28 680 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 LINS1Q8NG48 757 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 GSDMAQ96QA5 445 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CLK4Q9HAZ1 481 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 KIAA1468Q9P260 1216 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 LRRC42Q9Y546 428 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 NEURL4Q96JN8 1562 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CTAGE15A4D2H0 777 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 PPP1R37O75864 691 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CTAGE8P0CG41 777 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 LMNB1P20700 586 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 IL4RP24394 825 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 HDGFP51858 240 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 DNM1Q05193 864 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 TAF11Q15544 211 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 COBLL1Q53SF7 1204 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 SLC2A7Q6PXP3 512 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CTAGE6Q86UF2 777 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CTAGE4Q8IX94 777 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CCDC146Q8IYE0 955 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 ESX1Q8N693 406 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 ANKRD44Q8N8A2 993 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 AGAP11Q8TF27 550 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 CCT7Q99832 543 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 C2orf49Q9BVC5 232 aaPredicted RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 CPSF1Q10570 1443 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 ADGRL3Q9HAR2 1447 aa9.36□□□□□ -0.91
USP3-211ENST00000559257 PPRC1Q5VV67 1664 aaKnown RBP9.36□□□□□ -0.91
USP3-211ENST00000559257 E7ENQ6 273 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PPIP5K2O43314 1243 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 MAP4K4O95819 1239 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 A2MP01023 1474 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 POTEIP0CG38 1075 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 TRIM27P14373 513 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 OR52E8Q6IFG1 317 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 TRIM50Q86XT4 487 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 CCDC148Q8NFR7 591 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 DQX1Q8TE96 717 aaKnown RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 CCDC12Q8WUD4 166 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 APPBP2Q92624 585 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms