RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 KDM6AO15550 1401 aaPredicted RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 SMG6Q86US8 1419 aaKnown RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 COL3A1P02461 1466 aaPredicted RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 MINDY4BA8MYZ0 360 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 RNMTO43148 476 aaKnown RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 TFE3P19532 575 aaPredicted RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 ZNF76P36508 570 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 FANCCQ00597 558 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 LRRC14Q15048 493 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 C9orf131Q5VYM1 1079 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 AGMOQ6ZNB7 445 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 RELL1Q8IUW5 271 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 DZIP1LQ8IYY4 767 aaKnown RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 LINC00116Q8NCU8 138 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 PHC3Q8NDX5 983 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 RSRP1Q9BUV0 290 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 WDR18Q9BV38 432 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 SSBP4Q9BWG4 385 aaPredicted RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 SUGCTQ9HAC7 445 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 CYP4F12Q9HCS2 524 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 KBTBD4Q9NVX7 518 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 MIS18AQ9NYP9 233 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 CCNL1Q9UK58 526 aaPredicted RBP5.67□□□□□ -1.5
SPG11-211ENST00000558561 CYP8B1Q9UNU6 501 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 PNPLA7Q6ZV29 1317 aa5.67□□□□□ -1.5
SPG11-211ENST00000558561 PKD1L3Q7Z443 1732 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 MYH14Q7Z406 1995 aaKnown RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 PRAMEF22A3QJZ6 481 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 SCAMP3O14828 347 aaKnown RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 TIAF1O95411 115 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 PROCP04070 461 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 PRKAR2BP31323 418 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 GBP2P32456 591 aaPredicted RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 PREPP48147 710 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 RPS26P62854 115 aaKnown RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 SOX4Q06945 474 aaPredicted RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 DOC2BQ14184 412 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 ANKRD34AQ69YU3 496 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 FDX2Q6P4F2 183 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 ERMP1Q7Z2K6 904 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 TMEM74Q96NL1 305 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 SPOCK3Q9BQ16 436 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 THUMPD2Q9BTF0 503 aaKnown RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 CEP41Q9BYV8 373 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 KRT82Q9NSB4 513 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 CACNA2D2Q9NY47 1150 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 STK32BQ9NY57 414 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 PPP1R9AQ9ULJ8 1098 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 VIRMAQ69YN4 1812 aaKnown RBP5.66□□□□□ -1.5
SPG11-211ENST00000558561 TUBGCP6Q96RT7 1819 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 PCDH11XQ9BZA7 1347 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 PCDH11YQ9BZA8 1340 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 NPC1L1Q9UHC9 1359 aa5.66□□□□□ -1.5
SPG11-211ENST00000558561 LY75O60449 1722 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 E9PSI1 815 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 MSTNO14793 375 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 SART1O43290 800 aaKnown RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 PF4P02776 101 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 SLFN14P0C7P3 912 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 U2AF1L5P0DN76 240 aaPredicted RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 ADH5P11766 374 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 RLBP1P12271 317 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 U2AF1Q01081 240 aaKnown RBP eCLIP5.65□□□□□ -1.5
SPG11-211ENST00000558561 SEPT6Q14141 434 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 KIF4BQ2VIQ3 1234 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 HP1BP3Q5SSJ5 553 aaPredicted RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 MCM10Q7L590 875 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 HS2ST1Q7LGA3 356 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 JARID2Q92833 1246 aaPredicted RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 TP53INP1Q96A56 240 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 FAM46AQ96IP4 442 aaKnown RBP5.65□□□□□ -1.5
SPG11-211ENST00000558561 PLEKHF1Q96S99 279 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 TPSG1Q9NRR2 321 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 TMOD3Q9NYL9 352 aa5.65□□□□□ -1.5
SPG11-211ENST00000558561 KDRP35968 1356 aa5.65□□□□□ -1.51
SPG11-211ENST00000558561 TAF1LQ8IZX4 1826 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 ERVV-2B6SEH9 535 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 LMNB1P20700 586 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 PIP4K2AP48426 406 aaPredicted RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 CDK8P49336 464 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 HDLBPQ00341 1268 aaKnown RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 FAM160A1Q05DH4 1040 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 CAMK2GQ13555 558 aaPredicted RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 AMOTQ4VCS5 1084 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 DYMQ7RTS9 669 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 METTL16Q86W50 562 aaKnown RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 DNAJC10Q8IXB1 793 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 CCDC146Q8IYE0 955 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 ARMC10Q8N2F6 343 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 C2CD4AQ8NCU7 369 aaPredicted RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 RNF34Q969K3 372 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 GAL3ST3Q96A11 431 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 METTL5Q9NRN9 209 aaKnown RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 TFCP2L1Q9NZI6 479 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 PCDHA4Q9UN74 947 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 AP4E1Q9UPM8 1137 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 RRP7AQ9Y3A4 280 aaKnown RBP5.64□□□□□ -1.51
SPG11-211ENST00000558561 PCDHGC5Q9Y5F6 944 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 CSADQ9Y600 493 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms